PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
22401-22450 / 86044 show all
ckim-isaacSNPtimap_l150_m1_e0hetalt
57.1429
40.0000
100.0000
83.7838
69600
ckim-isaacSNPtimap_l150_m1_e0homalt
65.1458
48.3281
99.9153
66.1412
35413786354133
100.0000
ckim-isaacSNPtimap_l150_m2_e0*
72.1859
56.5571
99.7506
77.5984
11601891111601295
17.2414
ckim-isaacSNPtimap_l150_m2_e0het
75.7150
61.0434
99.6704
79.9741
786350187863262
7.6923
ckim-isaacSNPtimap_l150_m2_e0hetalt
57.1429
40.0000
100.0000
85.3659
69600
ckim-isaacSNPtimap_l150_m2_e0homalt
65.7563
49.0021
99.9197
70.0457
37323884373233
100.0000
ckim-isaacSNPtimap_l150_m2_e1*
72.1848
56.5603
99.7362
77.6680
11721900211721317
22.5806
ckim-isaacSNPtimap_l150_m2_e1het
75.7313
61.0680
99.6614
80.0450
794850677948273
11.1111
ckim-isaacSNPtimap_l150_m2_e1hetalt
57.1429
40.0000
100.0000
85.7143
69600
ckim-isaacSNPtimap_l150_m2_e1homalt
65.7188
48.9666
99.8939
70.0833
37673926376744
100.0000
ckim-isaacSNPtimap_l250_m0_e0*
68.2974
51.9708
99.5804
93.7826
71265871231
33.3333
ckim-isaacSNPtimap_l250_m0_e0het
70.8075
54.9251
99.6117
94.7975
51342151320
0.0000
ckim-isaacSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-isaacSNPtimap_l250_m0_e0homalt
62.5786
45.6422
99.5000
87.4451
19923719911
100.0000
ckim-isaacSNPtimap_l250_m1_e0*
66.4534
49.9017
99.4343
90.2759
228522942285132
15.3846
ckim-isaacSNPtimap_l250_m1_e0het
68.7954
52.6280
99.3007
91.8721
156214061562110
0.0000
ckim-isaacSNPtimap_l250_m1_e0hetalt
66.6667
50.0000
100.0000
88.2353
22200
ckim-isaacSNPtimap_l250_m1_e0homalt
61.8884
44.8662
99.7234
82.9922
72188672122
100.0000
ckim-isaacSNPtimap_l250_m2_e0*
66.8081
50.2995
99.4473
90.8038
251924892519143
21.4286
ckim-isaacSNPtimap_l250_m2_e0het
69.1244
53.0117
99.3092
92.1654
172515291725121
8.3333
ckim-isaacSNPtimap_l250_m2_e0hetalt
57.1429
40.0000
100.0000
90.4762
23200
ckim-isaacSNPtimap_l250_m2_e0homalt
62.2886
45.2830
99.7481
85.1339
79295779222
100.0000
ckim-isaacSNPtimap_l250_m2_e1*
66.8585
50.3546
99.4553
90.8557
255625202556143
21.4286
ckim-isaacSNPtimap_l250_m2_e1het
69.1304
53.0161
99.3186
92.2279
174915501749121
8.3333
ckim-isaacSNPtimap_l250_m2_e1hetalt
57.1429
40.0000
100.0000
90.4762
23200
ckim-isaacSNPtimap_l250_m2_e1homalt
62.4273
45.4289
99.7522
85.0970
80596780522
100.0000
ckim-isaacSNPtimap_siren*
86.1284
75.6983
99.8922
49.9174
7596724388759758216
19.5122
ckim-isaacSNPtimap_sirenhet
88.1134
78.8433
99.8538
52.2793
491841319849191726
8.3333
ckim-isaacSNPtimap_sirenhetalt
70.4545
54.3860
100.0000
72.0721
31263100
ckim-isaacSNPtimap_sirenhomalt
82.7288
70.5560
99.9776
44.7961
26752111642675366
100.0000
ckim-isaacSNPtisegdup*
98.3830
96.8521
99.9630
86.8421
189226151892273
42.8571
ckim-isaacSNPtisegduphet
98.4687
97.0158
99.9657
87.9143
116713591167140
0.0000
ckim-isaacSNPtisegduphetalt
100.0000
100.0000
100.0000
97.1014
20200
ckim-isaacSNPtisegduphomalt
98.2649
96.5889
100.0000
84.6188
7249256724900
ckim-isaacSNPtisegdupwithalt*
0.0000
100.0000
00000
ckim-isaacSNPtisegdupwithalthet
0.0000
100.0000
00000
ckim-isaacSNPtisegdupwithalthetalt
0.0000
100.0000
00000
ckim-isaacSNPtisegdupwithalthomalt
0.0000
100.0000
00000
ckim-isaacSNPtitech_badpromoters*
91.7197
84.7059
100.0000
34.5455
72137200
ckim-isaacSNPtitech_badpromotershet
88.6076
79.5455
100.0000
43.5484
3593500
ckim-isaacSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtitech_badpromotershomalt
94.8718
90.2439
100.0000
22.9167
3743700
ckim-isaacSNPtv**
98.3371
96.7926
99.9317
18.3312
93859631102938905642418
65.1090
ckim-isaacSNPtv*het
98.4858
97.0571
99.9572
19.2906
5742911741357457624632
13.0081
ckim-isaacSNPtv*hetalt
96.5558
93.3410
100.0000
30.0946
8135881300
ckim-isaacSNPtv*homalt
98.1562
96.3855
99.9931
16.5795
363492136313635152518
72.0000
ckim-isaacSNPtvHG002complexvar*
95.4727
91.5159
99.7871
19.3101
22527120884225437481401
83.3680
ckim-isaacSNPtvHG002complexvarhet
95.8287
92.0463
99.9352
18.9218
138745119891388879017
18.8889
ckim-isaacSNPtvHG002complexvarhetalt
93.4708
87.7419
100.0000
29.5337
2723827200
ckim-isaacSNPtvHG002complexvarhomalt
95.1060
90.6877
99.9768
19.5838
862548857862772016
80.0000