PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
22351-22400 / 86044 show all
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_11to50*
97.8395
96.2110
99.5241
24.2691
37581483764187
38.8889
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_11to50het
97.8866
96.2470
99.5832
25.6355
2385932389100
0.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
0.0000
0.0000
01000
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
98.0365
96.2158
99.9273
21.3265
137354137510
0.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_51to200*
76.9231
62.5000
100.0000
94.7368
53500
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_51to200het
80.0000
66.6667
100.0000
94.8052
42400
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
66.6667
50.0000
100.0000
93.7500
11100
ckim-isaacSNPtimap_l100_m0_e0*
75.5708
60.8148
99.7815
66.9687
13240853113241296
20.6897
ckim-isaacSNPtimap_l100_m0_e0het
78.6364
64.9145
99.7144
71.0617
907749069078263
11.5385
ckim-isaacSNPtimap_l100_m0_e0hetalt
60.0000
42.8571
100.0000
77.7778
68600
ckim-isaacSNPtimap_l100_m0_e0homalt
69.6665
53.4731
99.9279
52.0793
41573617415733
100.0000
ckim-isaacSNPtimap_l100_m1_e0*
80.0185
66.7647
99.8378
62.0110
3200115930320055210
19.2308
ckim-isaacSNPtimap_l100_m1_e0het
82.8228
70.7902
99.7835
65.4154
21196874621200464
8.6957
ckim-isaacSNPtimap_l100_m1_e0hetalt
73.9130
58.6207
100.0000
74.2424
17121700
ckim-isaacSNPtimap_l100_m1_e0homalt
75.0391
60.0668
99.9537
52.8051
1078871721078855
100.0000
ckim-isaacSNPtimap_l100_m2_e0*
80.3204
67.1841
99.8422
64.2807
3289416067328985210
19.2308
ckim-isaacSNPtimap_l100_m2_e0het
83.0715
71.1515
99.7894
67.1619
21788883421792464
8.6957
ckim-isaacSNPtimap_l100_m2_e0hetalt
75.0000
60.0000
100.0000
75.3425
18121800
ckim-isaacSNPtimap_l100_m2_e0homalt
75.4234
60.5604
99.9549
56.7558
1108872211108855
100.0000
ckim-isaacSNPtimap_l100_m2_e1*
80.3859
67.2749
99.8441
64.2491
3329116194332955210
19.2308
ckim-isaacSNPtimap_l100_m2_e1het
83.1462
71.2597
99.7920
67.1300
22062889822066464
8.6957
ckim-isaacSNPtimap_l100_m2_e1hetalt
76.0000
61.2903
100.0000
74.3243
19121900
ckim-isaacSNPtimap_l100_m2_e1homalt
75.4653
60.6143
99.9554
56.7172
1121072841121055
100.0000
ckim-isaacSNPtimap_l125_m0_e0*
72.1772
56.5507
99.7374
74.7461
721755457217194
21.0526
ckim-isaacSNPtimap_l125_m0_e0het
75.4138
60.6559
99.6620
78.2483
501232515012172
11.7647
ckim-isaacSNPtimap_l125_m0_e0hetalt
54.5455
37.5000
100.0000
85.7143
35300
ckim-isaacSNPtimap_l125_m0_e0homalt
65.7804
49.0314
99.9093
59.9855
22022289220222
100.0000
ckim-isaacSNPtimap_l125_m1_e0*
74.8103
59.8330
99.7896
70.2803
175521178317552377
18.9189
ckim-isaacSNPtimap_l125_m1_e0het
78.2097
64.3326
99.7200
73.5328
11751651511751333
9.0909
ckim-isaacSNPtimap_l125_m1_e0hetalt
66.6667
50.0000
100.0000
74.4681
12121200
ckim-isaacSNPtimap_l125_m1_e0homalt
68.7652
52.4129
99.9482
60.3233
57895256578933
100.0000
ckim-isaacSNPtimap_l125_m2_e0*
75.2532
60.4006
99.7925
72.3144
182761198218276387
18.4211
ckim-isaacSNPtimap_l125_m2_e0het
78.5719
64.8231
99.7229
74.9990
12236664012236343
8.8235
ckim-isaacSNPtimap_l125_m2_e0hetalt
66.6667
50.0000
100.0000
78.1818
12121200
ckim-isaacSNPtimap_l125_m2_e0homalt
69.3312
53.0727
99.9503
64.5277
60285330602833
100.0000
ckim-isaacSNPtimap_l125_m2_e1*
75.3035
60.4665
99.7895
72.3331
184841208518484398
20.5128
ckim-isaacSNPtimap_l125_m2_e1het
78.6508
64.9290
99.7264
75.0040
12393669412393343
8.8235
ckim-isaacSNPtimap_l125_m2_e1hetalt
66.6667
50.0000
100.0000
78.1818
12121200
ckim-isaacSNPtimap_l125_m2_e1homalt
69.3119
53.0546
99.9342
64.5595
60795379607944
100.0000
ckim-isaacSNPtimap_l150_m0_e0*
70.8651
54.9676
99.7000
80.5441
432135404321133
23.0769
ckim-isaacSNPtimap_l150_m0_e0het
74.1407
59.0347
99.6358
83.5333
300920883009111
9.0909
ckim-isaacSNPtimap_l150_m0_e0hetalt
0.0000
100.0000
03000
ckim-isaacSNPtimap_l150_m0_e0homalt
64.3926
47.5190
99.8478
66.4710
13121449131222
100.0000
ckim-isaacSNPtimap_l150_m1_e0*
71.6515
55.9050
99.7466
75.8793
11020869211020285
17.8571
ckim-isaacSNPtimap_l150_m1_e0het
75.2265
60.4123
99.6666
78.7514
747348977473252
8.0000