PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22251-22300 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I6_15 | map_l250_m1_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.4545 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | * | 40.0000 | 25.0000 | 100.0000 | 99.0099 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | het | 33.3333 | 20.0000 | 100.0000 | 99.3548 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e0 | homalt | 50.0000 | 33.3333 | 100.0000 | 95.8333 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | * | 40.0000 | 25.0000 | 100.0000 | 99.0431 | 2 | 6 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | het | 33.3333 | 20.0000 | 100.0000 | 99.3631 | 1 | 4 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | map_l250_m2_e1 | homalt | 50.0000 | 33.3333 | 100.0000 | 96.1538 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | map_siren | * | 63.4176 | 46.8852 | 97.9592 | 84.2105 | 143 | 162 | 144 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I6_15 | map_siren | het | 65.4206 | 48.9510 | 98.5915 | 87.8425 | 70 | 73 | 70 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | map_siren | hetalt | 68.4843 | 52.7778 | 97.5000 | 75.4601 | 38 | 34 | 39 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I6_15 | map_siren | homalt | 55.5556 | 38.8889 | 97.2222 | 80.4348 | 35 | 55 | 35 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I6_15 | segdup | * | 91.8429 | 86.8571 | 97.4359 | 90.7253 | 152 | 23 | 152 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | segdup | het | 93.9024 | 92.7711 | 95.0617 | 92.3368 | 77 | 6 | 77 | 4 | 3 | 75.0000 | |
| ckim-isaac | INDEL | I6_15 | segdup | hetalt | 91.5663 | 84.4444 | 100.0000 | 88.0126 | 38 | 7 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | segdup | homalt | 88.0952 | 78.7234 | 100.0000 | 87.9870 | 37 | 10 | 37 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | * | 96.0000 | 92.3077 | 100.0000 | 47.8261 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 7 | 0 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 25.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | tech_badpromoters | homalt | 80.0000 | 66.6667 | 100.0000 | 60.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | SNP | * | * | * | 98.5357 | 97.1616 | 99.9494 | 15.9907 | 2967930 | 86704 | 2968584 | 1504 | 880 | 58.5106 | |
| ckim-isaac | SNP | * | * | het | 98.6547 | 97.3796 | 99.9637 | 16.8583 | 1824505 | 49096 | 1825101 | 663 | 63 | 9.5023 | |
| ckim-isaac | SNP | * | * | hetalt | 96.5558 | 93.3410 | 100.0000 | 30.0946 | 813 | 58 | 813 | 0 | 0 | ||
| ckim-isaac | SNP | * | * | homalt | 98.3805 | 96.8182 | 99.9940 | 14.4545 | 1142612 | 37550 | 1142668 | 69 | 50 | 72.4638 | |
| ckim-isaac | SNP | * | HG002complexvar | * | 95.9550 | 92.3552 | 99.8467 | 16.9098 | 696714 | 57671 | 697067 | 1070 | 847 | 79.1589 | |
| ckim-isaac | SNP | * | HG002complexvar | het | 96.2337 | 92.7890 | 99.9440 | 16.5252 | 431933 | 33567 | 432230 | 242 | 35 | 14.4628 | |
| ckim-isaac | SNP | * | HG002complexvar | hetalt | 93.4708 | 87.7419 | 100.0000 | 29.5337 | 272 | 38 | 272 | 0 | 0 | ||
| ckim-isaac | SNP | * | HG002complexvar | homalt | 95.6391 | 91.6604 | 99.9788 | 17.3239 | 264509 | 24066 | 264563 | 56 | 45 | 80.3571 | |
| ckim-isaac | SNP | * | HG002compoundhet | * | 87.4314 | 80.5166 | 95.6453 | 38.0766 | 20791 | 5031 | 21327 | 971 | 803 | 82.6982 | |
| ckim-isaac | SNP | * | HG002compoundhet | het | 87.1652 | 78.2691 | 98.3428 | 43.2349 | 11097 | 3081 | 11631 | 196 | 36 | 18.3673 | |
| ckim-isaac | SNP | * | HG002compoundhet | hetalt | 96.5807 | 93.3875 | 100.0000 | 18.9325 | 805 | 57 | 805 | 0 | 0 | ||
| ckim-isaac | SNP | * | HG002compoundhet | homalt | 90.1933 | 82.4430 | 99.5521 | 29.8507 | 8889 | 1893 | 8890 | 40 | 35 | 87.5000 | |
| ckim-isaac | SNP | * | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | func_cds | * | 99.4183 | 98.8760 | 99.9666 | 20.1352 | 17946 | 204 | 17946 | 6 | 2 | 33.3333 | |
| ckim-isaac | SNP | * | func_cds | het | 99.4778 | 98.9965 | 99.9638 | 21.3254 | 11049 | 112 | 11049 | 4 | 0 | 0.0000 | |
| ckim-isaac | SNP | * | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 28.5714 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-isaac | SNP | * | func_cds | homalt | 99.3365 | 98.6818 | 100.0000 | 18.1191 | 6887 | 92 | 6887 | 0 | 0 | ||
| ckim-isaac | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.2905 | 92.1704 | 96.5104 | 61.7853 | 4391 | 373 | 4425 | 160 | 47 | 29.3750 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 94.1078 | 92.3077 | 95.9796 | 65.5314 | 2784 | 232 | 2817 | 118 | 7 | 5.9322 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.5412 | 91.9336 | 99.4434 | 50.8361 | 1607 | 141 | 1608 | 9 | 7 | 77.7778 | |
| ckim-isaac | SNP | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||