PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22051-22100 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | homalt | 70.4403 | 54.9020 | 98.2456 | 86.5882 | 112 | 92 | 112 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | * | 76.9231 | 62.5000 | 100.0000 | 98.4600 | 15 | 9 | 15 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | het | 80.0000 | 66.6667 | 100.0000 | 98.7805 | 10 | 5 | 10 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I1_5 | map_l250_m0_e0 | homalt | 71.4286 | 55.5556 | 100.0000 | 95.3704 | 5 | 4 | 5 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | * | 73.0539 | 57.5472 | 100.0000 | 96.9176 | 61 | 45 | 61 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | het | 78.7879 | 65.0000 | 100.0000 | 97.5549 | 39 | 21 | 39 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.7952 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m1_e0 | homalt | 64.6154 | 47.7273 | 100.0000 | 93.0233 | 21 | 23 | 21 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | * | 74.4444 | 59.2920 | 100.0000 | 97.1108 | 67 | 46 | 67 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | het | 80.0000 | 66.6667 | 100.0000 | 97.6190 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 50.0000 | 100.0000 | 98.9691 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e0 | homalt | 65.6716 | 48.8889 | 100.0000 | 94.1176 | 22 | 23 | 22 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | * | 74.7253 | 59.6491 | 100.0000 | 97.1536 | 68 | 46 | 68 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | het | 80.0000 | 66.6667 | 100.0000 | 97.6866 | 44 | 22 | 44 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 50.0000 | 100.0000 | 99.0000 | 1 | 1 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l250_m2_e1 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.0568 | 23 | 23 | 23 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_siren | * | 88.5873 | 80.5990 | 98.3333 | 78.2801 | 2422 | 583 | 2419 | 41 | 12 | 29.2683 | |
| ckim-isaac | INDEL | I1_5 | map_siren | het | 91.7548 | 86.3772 | 97.8466 | 80.2288 | 1452 | 229 | 1454 | 32 | 7 | 21.8750 | |
| ckim-isaac | INDEL | I1_5 | map_siren | hetalt | 85.4934 | 76.7857 | 96.4286 | 82.2410 | 86 | 26 | 81 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | map_siren | homalt | 84.1104 | 72.9373 | 99.3258 | 73.3293 | 884 | 328 | 884 | 6 | 3 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | segdup | * | 97.2169 | 95.6563 | 98.8293 | 93.2182 | 1013 | 46 | 1013 | 12 | 8 | 66.6667 | |
| ckim-isaac | INDEL | I1_5 | segdup | het | 97.7612 | 97.3978 | 98.1273 | 94.4800 | 524 | 14 | 524 | 10 | 6 | 60.0000 | |
| ckim-isaac | INDEL | I1_5 | segdup | hetalt | 92.1348 | 85.4167 | 100.0000 | 94.7165 | 41 | 7 | 41 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | segdup | homalt | 97.0748 | 94.7146 | 99.5556 | 90.3516 | 448 | 25 | 448 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I1_5 | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | * | 95.2381 | 90.9091 | 100.0000 | 51.2195 | 20 | 2 | 20 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 46.6667 | 8 | 0 | 8 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | tech_badpromoters | homalt | 91.6667 | 84.6154 | 100.0000 | 54.1667 | 11 | 2 | 11 | 0 | 0 | ||
| ckim-isaac | INDEL | I6_15 | * | * | 86.2978 | 78.9268 | 95.1875 | 41.9911 | 19592 | 5231 | 19601 | 991 | 727 | 73.3602 | |
| ckim-isaac | INDEL | I6_15 | * | het | 88.7567 | 85.9065 | 91.8024 | 48.2080 | 8619 | 1414 | 8623 | 770 | 554 | 71.9481 | |
| ckim-isaac | INDEL | I6_15 | * | hetalt | 81.9509 | 69.9567 | 98.9089 | 28.8855 | 5982 | 2569 | 5983 | 66 | 52 | 78.7879 | |
| ckim-isaac | INDEL | I6_15 | * | homalt | 87.6777 | 79.9968 | 96.9903 | 41.8473 | 4991 | 1248 | 4995 | 155 | 121 | 78.0645 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | * | 77.4674 | 68.9900 | 88.3200 | 51.9231 | 3306 | 1486 | 3312 | 438 | 187 | 42.6941 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | het | 79.6121 | 75.4140 | 84.3052 | 55.5219 | 1776 | 579 | 1735 | 323 | 120 | 37.1517 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | hetalt | 70.4127 | 56.1733 | 94.3226 | 46.2179 | 687 | 536 | 731 | 44 | 30 | 68.1818 | |
| ckim-isaac | INDEL | I6_15 | HG002complexvar | homalt | 79.2387 | 69.4399 | 92.2574 | 47.0554 | 843 | 371 | 846 | 71 | 37 | 52.1127 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | * | 78.6319 | 69.8154 | 89.9971 | 31.6672 | 6127 | 2649 | 6127 | 681 | 634 | 93.0984 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | het | 32.8633 | 69.2308 | 21.5453 | 64.8197 | 144 | 64 | 145 | 528 | 493 | 93.3712 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | hetalt | 82.1207 | 69.9426 | 99.4336 | 21.1377 | 5971 | 2566 | 5969 | 34 | 23 | 67.6471 | |
| ckim-isaac | INDEL | I6_15 | HG002compoundhet | homalt | 15.7021 | 38.7097 | 9.8485 | 69.8630 | 12 | 19 | 13 | 119 | 118 | 99.1597 | |
| ckim-isaac | INDEL | I6_15 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I6_15 | func_cds | * | 91.1392 | 83.7209 | 100.0000 | 33.3333 | 36 | 7 | 36 | 0 | 0 | ||