PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
22001-22050 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 93.9394 | 1 | 1 | 0 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 75.6757 | 60.8696 | 100.0000 | 20.0000 | 14 | 9 | 16 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | * | 81.3853 | 69.2449 | 98.6877 | 86.2752 | 376 | 167 | 376 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | het | 85.2632 | 74.5399 | 99.5902 | 88.6512 | 243 | 83 | 243 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 88.8889 | 88.8889 | 88.8889 | 91.7431 | 8 | 1 | 8 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m0_e0 | homalt | 74.4048 | 60.0962 | 97.6562 | 75.2418 | 125 | 83 | 125 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | * | 85.2037 | 74.8320 | 98.9130 | 83.0315 | 1002 | 337 | 1001 | 11 | 5 | 45.4545 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | het | 89.1566 | 80.9524 | 99.2114 | 85.2042 | 629 | 148 | 629 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 83.4783 | 75.0000 | 94.1176 | 87.1698 | 33 | 11 | 32 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m1_e0 | homalt | 78.8863 | 65.6371 | 98.8372 | 75.6719 | 340 | 178 | 340 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | * | 85.4172 | 75.1462 | 98.9403 | 84.3863 | 1028 | 340 | 1027 | 11 | 5 | 45.4545 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | het | 89.3971 | 81.3367 | 99.2308 | 86.3273 | 645 | 148 | 645 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 83.4783 | 75.0000 | 94.1176 | 88.4354 | 33 | 11 | 32 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e0 | homalt | 79.0960 | 65.9134 | 98.8701 | 77.8750 | 350 | 181 | 350 | 4 | 2 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | * | 85.4353 | 75.2688 | 98.7770 | 84.4363 | 1050 | 345 | 1050 | 13 | 5 | 38.4615 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | het | 89.3559 | 81.3580 | 99.0977 | 86.3869 | 659 | 151 | 659 | 6 | 1 | 16.6667 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 83.9506 | 75.5556 | 94.4444 | 88.0795 | 34 | 11 | 34 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l100_m2_e1 | homalt | 79.1574 | 66.1111 | 98.6188 | 77.9671 | 357 | 183 | 357 | 5 | 2 | 40.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | * | 79.8464 | 67.0968 | 98.5782 | 90.1356 | 208 | 102 | 208 | 3 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | het | 84.4311 | 73.4375 | 99.2958 | 91.6716 | 141 | 51 | 141 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 85.7143 | 75.0000 | 100.0000 | 96.4286 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l125_m0_e0 | homalt | 71.1111 | 56.1404 | 96.9697 | 81.1429 | 64 | 50 | 64 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | * | 82.3612 | 70.6024 | 98.8196 | 86.4457 | 586 | 244 | 586 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | het | 85.6476 | 75.5144 | 98.9218 | 88.5352 | 367 | 119 | 367 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 90.9091 | 88.2353 | 93.7500 | 90.8571 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m1_e0 | homalt | 76.5478 | 62.3853 | 99.0291 | 78.6307 | 204 | 123 | 204 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | * | 82.6884 | 71.0618 | 98.8636 | 87.6156 | 609 | 248 | 609 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | het | 86.0068 | 76.0563 | 98.9529 | 89.5285 | 378 | 119 | 378 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 91.7476 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e0 | homalt | 77.0609 | 63.0499 | 99.0783 | 80.6250 | 215 | 126 | 215 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | * | 82.9105 | 71.3793 | 98.8854 | 87.6621 | 621 | 249 | 621 | 7 | 2 | 28.5714 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | het | 86.2222 | 76.3780 | 98.9796 | 89.4962 | 388 | 120 | 388 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 88.8889 | 84.2105 | 94.1176 | 92.0188 | 16 | 3 | 16 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l125_m2_e1 | homalt | 77.2242 | 63.2653 | 99.0868 | 80.8734 | 217 | 126 | 217 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | * | 78.7671 | 65.3409 | 99.1379 | 93.2676 | 115 | 61 | 115 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | het | 84.7826 | 73.5849 | 100.0000 | 94.4681 | 78 | 28 | 78 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 97.0149 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m0_e0 | homalt | 67.9612 | 52.2388 | 97.2222 | 85.3659 | 35 | 32 | 35 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | * | 77.6978 | 64.0316 | 98.7805 | 90.5503 | 324 | 182 | 324 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | het | 81.9608 | 69.8997 | 99.0521 | 91.9924 | 209 | 90 | 209 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 94.8905 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m1_e0 | homalt | 70.1299 | 54.5455 | 98.1818 | 84.2632 | 108 | 90 | 108 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | * | 77.9463 | 64.3545 | 98.8166 | 91.4754 | 334 | 185 | 334 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | het | 82.4197 | 70.5502 | 99.0909 | 92.6224 | 218 | 91 | 218 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 87.5000 | 77.7778 | 100.0000 | 95.4839 | 7 | 2 | 7 | 0 | 0 | ||
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e0 | homalt | 69.8718 | 54.2289 | 98.1982 | 86.5942 | 109 | 92 | 109 | 2 | 0 | 0.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | * | 78.2708 | 64.7834 | 98.8506 | 91.4496 | 344 | 187 | 344 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | het | 82.5046 | 70.6625 | 99.1150 | 92.6095 | 224 | 93 | 224 | 2 | 1 | 50.0000 | |
| ckim-isaac | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 88.8889 | 80.0000 | 100.0000 | 95.0617 | 8 | 2 | 8 | 0 | 0 | ||