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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
21951-22000 / 86044 show all
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
89.9396
84.3248
96.3555
40.6305
582610835843221166
75.1131
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
90.9226
92.4365
89.4575
60.7169
14911221451171123
71.9298
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.2250
84.5061
99.1045
23.0475
392772039843630
83.3333
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
76.1905
62.8659
96.6825
50.9872
4082414081413
92.8571
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
91.7145
87.1038
96.8405
38.5031
51677655180169126
74.5562
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
92.6668
94.9700
90.4727
59.4634
126567124413194
71.7557
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
93.0591
87.6396
99.1931
21.1150
353149835652924
82.7586
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
78.0231
64.9737
97.6316
49.3333
37120037198
88.8889
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
90.1687
84.9804
96.0316
53.5294
714612637163296207
69.9324
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
91.3280
92.3546
90.3239
69.1828
22711882231239158
66.1088
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
91.0304
84.2624
98.9806
25.8726
402175140784235
83.3333
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
83.4392
72.4958
98.2739
64.9314
8543248541514
93.3333
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.4795
84.4436
95.1541
60.5296
13576250113588692434
62.7168
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
90.1406
89.3302
90.9658
70.1878
57356855689565335
59.2920
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
89.7782
82.5984
98.3250
32.1288
4870102649318471
84.5238
ckim-isaacINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
87.7042
78.9949
98.5719
61.4567
297179029684328
65.1163
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_11to50*
91.7626
87.4564
96.5147
48.4959
5013719504018291
50.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_11to50het
92.0106
92.2964
91.7266
69.6573
1258105127511543
37.3913
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_11to50hetalt
92.0493
86.2286
98.7126
25.5959
328152432974335
81.3953
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_11to50homalt
89.2397
84.0426
95.1220
53.9757
474904682413
54.1667
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_51to200*
67.9365
51.9417
98.1651
46.0396
1079910721
50.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_51to200het
87.5000
77.7778
100.0000
95.7447
216200
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
64.5069
48.0447
98.1308
30.0654
869310521
50.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_diTR_51to200homalt
0.0000
100.0000
00000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
96.8939
95.6734
98.1460
66.3548
254311525414816
33.3333
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10het
97.2920
97.3799
97.2043
69.4213
13383613563910
25.6410
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
94.8810
91.7722
98.2079
71.1479
2902627454
80.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
96.9784
94.5248
99.5628
57.7562
9155391142
50.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10*
100.0000
100.0000
100.0000
99.9874
10100
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.9394
10100
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50*
92.3815
89.1767
95.8253
57.6036
3477422348915275
49.3421
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50het
92.1781
91.6618
92.7003
64.7784
1561142156212354
43.9024
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
90.8242
84.7922
97.7800
34.6306
9591729692217
77.2727
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
94.3325
89.8592
99.2746
57.8234
95710895874
57.1429
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200*
70.6147
60.2230
85.3403
77.0433
162107163287
25.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200het
56.9192
62.7451
52.0833
91.3514
321925232
8.6957
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200hetalt
73.9245
59.9078
96.5035
42.1053
1308713855
100.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
100.0000
01000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_triTR_11to50*
96.1245
94.5714
97.7295
52.4859
99357990239
39.1304
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
96.0637
95.9574
96.1702
60.0680
45119452186
33.3333
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
96.2076
93.2907
99.3127
27.2500
2922128922
100.0000
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
96.1516
93.6330
98.8095
54.5946
2501724931
33.3333
ckim-isaacINDELI1_5lowcmp_SimpleRepeat_triTR_51to200*
71.6418
60.0000
88.8889
67.8571
15101620
0.0000