PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
21651-21700 / 86044 show all
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
82.3091
73.9130
92.8571
85.9649
51185243
75.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
82.6787
79.0895
86.6092
82.6495
1025271110617182
47.9532
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
81.5043
75.5582
88.4663
84.8513
643208721947
7.4468
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
91.7019
85.8108
98.4615
77.2063
3816338465
83.3333
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
84.2675
79.8913
89.1509
81.5972
88222294511566
57.3913
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
83.0006
75.5556
92.0732
84.2949
544176604524
7.6923
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
93.3541
87.9896
99.4152
75.0910
3374634022
100.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
93.8698
91.3024
96.5857
72.7788
6078579616721897
44.4954
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.5449
90.4908
96.8125
75.4534
3835403391812910
7.7519
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
60.0000
20200
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
96.0776
92.7182
99.6894
66.0081
2241176224776
85.7143
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
94.4491
90.7138
98.5051
60.8883
28251289228401431172
39.9072
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
94.2933
90.4234
98.5092
63.1853
1770418751784127018
6.6667
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
85.7143
75.0000
100.0000
76.9231
93900
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
95.3063
91.2223
99.7730
55.8289
105381014105512418
75.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50*
93.1299
89.8491
96.6594
59.1348
4346491445615472
46.7532
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50het
92.5831
88.2783
97.3293
62.2126
27793692879793
3.7975
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
95.9870
92.7725
99.4322
50.3135
1566122157694
44.4444
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_51to200*
64.0000
50.0000
88.8889
96.9697
88810
0.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_51to200het
42.8571
30.0000
75.0000
98.2143
37310
0.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
90.9091
83.3333
100.0000
91.9355
51500
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
98.3003
96.8730
99.7704
41.9223
607219660831411
78.5714
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
98.3899
96.9496
99.8736
43.2587
3941124395152
40.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
75.0000
20200
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
98.3145
96.7288
99.9531
38.9223
212972213011
100.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50*
97.5405
96.0212
99.1085
32.5488
10305427103399345
48.3871
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50het
97.5990
96.0558
99.1926
35.3810
64782666511536
11.3208
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
97.8767
95.9619
99.8695
26.2226
3826161382754
80.0000
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_51to200*
61.6652
61.3861
61.9469
89.2176
6239704311
25.5814
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_51to200het
66.2722
72.7273
60.8696
89.6513
481856364
11.1111
ckim-isaacINDELD6_15segdupwithalthetalt
0.0000
100.0000
00000
ckim-isaacINDELD6_15segdupwithalthomalt
0.0000
100.0000
00000
ckim-isaacINDELD6_15tech_badpromoters*
96.9697
94.1176
100.0000
48.3871
1611600
ckim-isaacINDELD6_15tech_badpromotershet
94.7368
90.0000
100.0000
57.8947
91800
ckim-isaacINDELD6_15tech_badpromotershetalt
100.0000
100.0000
100.0000
0.0000
10200
ckim-isaacINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
40.0000
60600
ckim-isaacINDELI16_PLUS**
74.7295
62.4588
93.0005
54.4140
398323943986300193
64.3333