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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
21601-21650 / 86044 show all
ckim-isaacSNPtiHG002complexvarhet
96.4266
93.1447
99.9482
15.3403
2931882157829334315218
11.8421
ckim-isaacSNPtiHG002complexvarhetalt
92.7461
86.4734
100.0000
28.1124
1792817900
ckim-isaacSNPtiHG002complexvarhomalt
95.8992
92.1386
99.9798
16.1839
178255152091782863629
80.5556
ckim-isaacSNPtiHG002compoundhet*
88.7627
82.1776
96.4952
32.6037
14363311514647532421
79.1353
ckim-isaacSNPtiHG002compoundhethet
88.4015
80.2104
98.4558
36.9008
76241881790612419
15.3226
ckim-isaacSNPtiHG002compoundhethetalt
96.2366
92.7461
100.0000
18.6364
5374253700
ckim-isaacSNPtiHG002compoundhethomalt
91.0386
83.8788
99.5347
26.2921
6202119262032924
82.7586
ckim-isaacSNPtidecoy*
0.0000
100.0000
00000
ckim-isaacSNPtidecoyhet
0.0000
100.0000
00000
ckim-isaacSNPtidecoyhetalt
0.0000
100.0000
00000
ckim-isaacSNPtidecoyhomalt
0.0000
100.0000
00000
ckim-isaacSNPtifunc_cds*
99.4788
98.9918
99.9707
19.0273
136481391364842
50.0000
ckim-isaacSNPtifunc_cdshet
99.5275
99.0828
99.9763
20.1440
842678842620
0.0000
ckim-isaacSNPtifunc_cdshetalt
100.0000
100.0000
100.0000
27.2727
80800
ckim-isaacSNPtifunc_cdshomalt
99.4184
98.8436
100.0000
17.1197
521461521400
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
94.2969
92.1490
96.5473
61.2007
2993255302010827
25.0000
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
94.1838
92.7372
95.6762
65.3122
18771471903866
6.9767
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.1004
91.1765
99.3772
49.3237
1116108111776
85.7143
ckim-isaacSNPtilowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.8280
94.9712
98.7588
48.1636
26553140626734336168
50.0000
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.7656
94.6334
98.9961
51.3619
168939581705917313
7.5145
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
90.9091
83.3333
100.0000
64.2857
51500
ckim-isaacSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.6487
95.5751
99.8142
40.4145
965544796701811
61.1111
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
94.4491
90.7138
98.5051
60.8883
28251289228401431172
39.9072
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.2933
90.4234
98.5092
63.1853
1770418751784127018
6.6667
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
85.7143
75.0000
100.0000
76.9231
93900
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
95.3063
91.2223
99.7730
55.8289
105381014105512418
75.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
96.6063
94.2548
99.0780
47.3389
27891702794266
23.0769
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
96.7398
94.7570
98.8075
51.0833
1735961740211
4.7619
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
96.5644
93.4397
99.9052
38.7696
105474105411
100.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
96.7084
94.4652
99.0608
42.7483
378922237973612
33.3333
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.7262
94.6148
98.9340
44.5934
24071372413262
7.6923
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
96.9804
94.2019
99.9277
38.3793
138185138311
100.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
96.6206
94.3419
99.0120
44.7425
230113823052310
43.4783
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
96.3282
93.7975
98.9993
46.0791
1482981484152
13.3333
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
0.0000
10100
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
97.5553
95.3380
99.8782
41.5658
8184082011
100.0000
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
74.3678
72.8507
75.9494
87.5981
161601805716
28.0702
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
73.5901
72.3684
74.8538
88.1906
11042128433
6.9767
ckim-isaacSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000