PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
21051-21100 / 86044 show all
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
78.7936
69.0909
91.6667
70.8738
38175554
80.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
93.0003
88.7701
97.6540
47.5385
3324233382
25.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
93.1635
90.0348
96.5174
56.7974
77786776287
25.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
93.4330
91.3758
95.5850
59.8048
44542433205
25.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
80.1478
69.6970
94.2857
75.1773
23103321
50.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
93.9237
90.0875
98.1013
46.7116
3093431061
16.6667
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
81.5800
75.0000
89.4256
42.8500
20676892055243230
94.6502
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
75.4208
86.9067
66.6165
52.9703
53180443222213
95.9459
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
83.2773
71.8970
98.9378
35.0419
122848013041410
71.4286
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
81.9149
70.4805
97.7778
45.5017
30812930877
100.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
75.0000
11100
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
50.0000
10100
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
0.0000
0.0000
01000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
91.0608
87.8273
94.5415
37.6092
12107167812020694633
91.2104
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
89.1325
94.2362
84.5533
48.1916
36462233246593548
92.4115
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
91.9132
85.7987
98.9660
29.1571
6102101064136758
86.5672
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
90.7836
84.1298
98.5804
37.3201
235944523613427
79.4118
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
93.1339
90.7869
95.6056
36.5855
1006110219986459410
89.3246
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
91.5762
95.2963
88.1356
47.4691
31201542808378341
90.2116
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
94.2123
89.8860
98.9760
27.5881
488855051235348
90.5660
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
92.2495
86.6245
98.6558
36.0651
205331720552821
75.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
91.0480
87.7443
94.6101
39.6686
12973181212884734647
88.1471
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
89.4763
93.5448
85.7470
50.2621
41592873742622558
89.7106
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
91.7285
85.5171
98.9129
30.0899
6135103964607161
85.9155
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
91.0457
84.6445
98.4943
38.8914
267948626824128
68.2927
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
89.9895
86.0506
94.3064
43.1744
15206246515106912765
83.8816
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
88.0249
90.0274
86.1096
53.5183
52635834761768648
84.3750
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
90.5907
83.7697
98.6209
32.2653
67511308715110087
87.0000
ckim-isaacINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
91.1743
84.7584
98.6411
42.0544
319257431944430
68.1818
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
91.1545
88.4965
93.9771
38.2912
837010888301532447
84.0226
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
88.0210
92.7552
83.7467
49.6639
25351982195426362
84.9765
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
92.8637
87.9925
98.3058
30.4621
419957344687770
90.9091
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
90.4376
83.7686
98.2603
35.1614
163631716382915
51.7241
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
73.3614
64.8603
84.4271
38.2979
766415759140137
97.8571
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
53.2627
83.1081
39.1892
51.8438
1232587135134
99.2593
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
79.1201
65.5963
99.6683
30.7692
57230060120
0.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
60.4255
44.0994
95.9459
40.8000
71907133
100.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
90.5810
88.7218
92.5197
79.4165
23630235197
36.8421
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
90.9744
92.2581
89.7260
80.4813
14312131153
20.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
83.3906
75.6757
92.8571
77.4194
2893933
100.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
92.8571
87.8378
98.4848
78.0000
6596511
100.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
70.5404
70.1754
70.9091
97.0238
401739165
31.2500
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
68.7192
73.8095
64.2857
97.6068
311118102
20.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
56.1404
44.4444
76.1905
92.0152
451653
60.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
83.3333
83.3333
83.3333
98.5542
51510
0.0000
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
92.1912
88.4459
96.2678
41.3787
3261426325012683
65.8730
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
91.5169
89.7281
93.3784
46.7817
148517013829858
59.1837
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9557
84.7716
98.1132
33.9074
100218010922118
85.7143
ckim-isaacINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
94.9121
91.0588
99.1060
39.4900
7747677677
100.0000