PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20801-20850 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 90.8083 | 87.4974 | 94.3796 | 47.9598 | 37917 | 5418 | 37363 | 2225 | 1830 | 82.2472 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 90.5655 | 92.3733 | 88.8270 | 56.6366 | 16460 | 1359 | 15479 | 1947 | 1601 | 82.2291 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 90.4880 | 83.4521 | 98.8195 | 30.8039 | 11710 | 2322 | 12138 | 145 | 128 | 88.2759 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 91.2469 | 84.8746 | 98.6537 | 45.5252 | 9747 | 1737 | 9746 | 133 | 101 | 75.9398 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 89.8755 | 85.9451 | 94.1826 | 54.7512 | 56166 | 9185 | 55450 | 3425 | 2525 | 73.7226 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 89.4545 | 89.1929 | 89.7177 | 61.8267 | 27186 | 3294 | 25967 | 2976 | 2168 | 72.8495 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 89.1201 | 81.4606 | 98.3693 | 34.9531 | 13608 | 3097 | 14116 | 234 | 204 | 87.1795 | |
| ckim-isaac | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 91.0850 | 84.6196 | 98.6202 | 51.6582 | 15372 | 2794 | 15367 | 215 | 153 | 71.1628 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | * | 92.1428 | 89.6098 | 94.8232 | 41.9297 | 32790 | 3802 | 32348 | 1766 | 1366 | 77.3499 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.9145 | 93.3439 | 90.5282 | 50.5104 | 14711 | 1049 | 14002 | 1465 | 1126 | 76.8601 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 91.6583 | 85.8616 | 98.2945 | 30.7003 | 8994 | 1481 | 9279 | 161 | 143 | 88.8199 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 92.7880 | 87.7185 | 98.4794 | 33.6241 | 9085 | 1272 | 9067 | 140 | 97 | 69.2857 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 73.3405 | 66.4921 | 81.7614 | 45.2275 | 1397 | 704 | 1309 | 292 | 281 | 96.2329 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 58.1410 | 81.6327 | 45.1485 | 57.8816 | 400 | 90 | 228 | 277 | 270 | 97.4729 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 78.3824 | 64.7764 | 99.2239 | 34.3044 | 811 | 441 | 895 | 7 | 4 | 57.1429 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 67.2694 | 51.8106 | 95.8763 | 44.7293 | 186 | 173 | 186 | 8 | 7 | 87.5000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.5480 | 97.7849 | 99.3232 | 55.6830 | 27634 | 626 | 27589 | 188 | 94 | 50.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6542 | 98.2774 | 99.0338 | 56.4448 | 16146 | 283 | 16093 | 157 | 70 | 44.5860 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.5151 | 89.5327 | 95.7031 | 72.8238 | 479 | 56 | 490 | 22 | 20 | 90.9091 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 98.6735 | 97.4593 | 99.9183 | 53.0977 | 11009 | 287 | 11006 | 9 | 4 | 44.4444 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.5631 | 57.2581 | 71.4286 | 99.8537 | 71 | 53 | 65 | 26 | 10 | 38.4615 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 61.4577 | 58.6207 | 64.5833 | 99.8482 | 51 | 36 | 31 | 17 | 5 | 29.4118 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 56.0000 | 43.7500 | 77.7778 | 99.2094 | 7 | 9 | 21 | 6 | 4 | 66.6667 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 70.2703 | 61.9048 | 81.2500 | 99.9411 | 13 | 8 | 13 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 93.4046 | 90.2930 | 96.7382 | 47.0617 | 17934 | 1928 | 17795 | 600 | 351 | 58.5000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 93.3376 | 91.6367 | 95.1028 | 49.5731 | 10179 | 929 | 9943 | 512 | 284 | 55.4688 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 89.1293 | 81.6555 | 98.1092 | 39.4326 | 2190 | 492 | 2283 | 44 | 37 | 84.0909 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.2832 | 91.6502 | 99.2161 | 44.8245 | 5565 | 507 | 5569 | 44 | 30 | 68.1818 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.1674 | 71.9397 | 88.0095 | 54.7793 | 1910 | 745 | 1857 | 253 | 201 | 79.4466 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.0439 | 75.2066 | 72.9167 | 67.8332 | 728 | 240 | 630 | 234 | 184 | 78.6325 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 78.4745 | 65.1883 | 98.5629 | 35.0700 | 779 | 416 | 823 | 12 | 11 | 91.6667 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 89.3587 | 81.9106 | 98.2968 | 40.7781 | 403 | 89 | 404 | 7 | 6 | 85.7143 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.2675 | 94.3265 | 98.2901 | 38.7683 | 6351 | 382 | 6323 | 110 | 70 | 63.6364 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.4258 | 95.4620 | 97.4092 | 41.9487 | 3492 | 166 | 3459 | 92 | 56 | 60.8696 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 94.7339 | 90.5742 | 99.2941 | 29.5191 | 836 | 87 | 844 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 96.6320 | 94.0056 | 99.4094 | 36.1609 | 2023 | 129 | 2020 | 12 | 9 | 75.0000 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 81.9633 | 76.1261 | 88.7701 | 48.1994 | 169 | 53 | 166 | 21 | 16 | 76.1905 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.2913 | 80.0000 | 61.1111 | 70.0000 | 40 | 10 | 33 | 21 | 16 | 76.1905 | |
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 84.2593 | 72.8000 | 100.0000 | 24.6032 | 91 | 34 | 95 | 0 | 0 | ||
| ckim-isaac | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 89.4118 | 80.8511 | 100.0000 | 30.9091 | 38 | 9 | 38 | 0 | 0 | ||
| ckim-isaac | INDEL | * | map_l100_m0_e0 | * | 78.2134 | 65.0032 | 98.1625 | 86.3822 | 1016 | 547 | 1015 | 19 | 7 | 36.8421 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | het | 80.6462 | 68.5602 | 97.9050 | 88.4199 | 700 | 321 | 701 | 15 | 5 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | hetalt | 82.6291 | 72.7273 | 95.6522 | 89.6396 | 24 | 9 | 22 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | * | map_l100_m0_e0 | homalt | 72.6368 | 57.3674 | 98.9831 | 75.1684 | 292 | 217 | 292 | 3 | 1 | 33.3333 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | * | 81.4370 | 69.4925 | 98.3399 | 83.2871 | 2492 | 1094 | 2488 | 42 | 20 | 47.6190 | |
| ckim-isaac | INDEL | * | map_l100_m1_e0 | het | 83.9386 | 73.4228 | 97.9701 | 85.4069 | 1641 | 594 | 1641 | 34 | 14 | 41.1765 | |