PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
20251-20300 / 86044 show all | |||||||||||||||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 82.4610 | 70.7692 | 98.7805 | 27.7533 | 460 | 190 | 486 | 6 | 5 | 83.3333 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 91.8919 | 86.2944 | 98.2659 | 34.2205 | 170 | 27 | 170 | 3 | 2 | 66.6667 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.0651 | 97.0076 | 99.1459 | 33.5614 | 3955 | 122 | 3947 | 34 | 24 | 70.5882 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.2135 | 97.8118 | 98.6185 | 35.4245 | 2235 | 50 | 2213 | 31 | 21 | 67.7419 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 97.2482 | 95.2381 | 99.3450 | 30.3951 | 440 | 22 | 455 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.0843 | 96.2406 | 100.0000 | 31.1996 | 1280 | 50 | 1279 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 85.5172 | 82.6667 | 88.5714 | 44.4444 | 62 | 13 | 62 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 69.3642 | 92.3077 | 55.5556 | 70.4918 | 12 | 1 | 10 | 8 | 5 | 62.5000 | |
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 87.3563 | 77.5510 | 100.0000 | 20.0000 | 38 | 11 | 40 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.0000 | 92.3077 | 100.0000 | 20.0000 | 12 | 1 | 12 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | * | 80.7640 | 68.5979 | 98.1758 | 85.4699 | 592 | 271 | 592 | 11 | 4 | 36.3636 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | het | 83.0777 | 72.2504 | 97.7221 | 87.1675 | 427 | 164 | 429 | 10 | 3 | 30.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 83.8983 | 78.5714 | 90.0000 | 92.5373 | 11 | 3 | 9 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m0_e0 | homalt | 74.7573 | 59.6899 | 100.0000 | 74.1176 | 154 | 104 | 154 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | * | 83.8870 | 73.1061 | 98.3977 | 82.4582 | 1351 | 497 | 1351 | 22 | 10 | 45.4545 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | het | 85.8620 | 76.3441 | 98.0912 | 84.3537 | 923 | 286 | 925 | 18 | 6 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 77.8589 | 68.0851 | 90.9091 | 88.5813 | 32 | 15 | 30 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m1_e0 | homalt | 80.0809 | 66.8919 | 99.7481 | 73.7260 | 396 | 196 | 396 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | * | 84.1952 | 73.5770 | 98.3950 | 83.2672 | 1409 | 506 | 1410 | 23 | 11 | 47.8261 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | het | 86.2638 | 76.9904 | 98.0769 | 84.9825 | 967 | 289 | 969 | 19 | 7 | 36.8421 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 77.0186 | 66.6667 | 91.1765 | 89.5706 | 32 | 16 | 31 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e0 | homalt | 80.2348 | 67.1031 | 99.7567 | 75.2260 | 410 | 201 | 410 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | * | 84.2482 | 73.6462 | 98.4160 | 83.3218 | 1428 | 511 | 1429 | 23 | 11 | 47.8261 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | het | 86.3591 | 77.1293 | 98.0981 | 85.0382 | 978 | 290 | 980 | 19 | 7 | 36.8421 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 77.1930 | 66.6667 | 91.6667 | 89.2216 | 34 | 17 | 33 | 3 | 3 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l100_m2_e1 | homalt | 80.2314 | 67.0968 | 99.7602 | 75.3982 | 416 | 204 | 416 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | * | 77.3562 | 63.7097 | 98.4424 | 89.5098 | 316 | 180 | 316 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | het | 80.1370 | 67.8261 | 97.9079 | 90.6968 | 234 | 111 | 234 | 5 | 1 | 20.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.0000 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l125_m0_e0 | homalt | 70.1754 | 54.0541 | 100.0000 | 79.5396 | 80 | 68 | 80 | 0 | 0 | ||
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | * | 78.8546 | 65.8088 | 98.3516 | 87.2415 | 716 | 372 | 716 | 12 | 6 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | het | 81.7401 | 69.9725 | 98.2659 | 88.4897 | 508 | 218 | 510 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | hetalt | 73.2558 | 69.2308 | 77.7778 | 95.6311 | 9 | 4 | 7 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m1_e0 | homalt | 72.4954 | 57.0201 | 99.5000 | 79.8184 | 199 | 150 | 199 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | * | 79.3734 | 66.4917 | 98.4456 | 87.8826 | 760 | 383 | 760 | 12 | 6 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | het | 82.3461 | 70.8115 | 98.3696 | 88.9842 | 541 | 223 | 543 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | hetalt | 72.7273 | 66.6667 | 80.0000 | 95.9514 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e0 | homalt | 72.8223 | 57.4176 | 99.5238 | 81.1321 | 209 | 155 | 209 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | * | 79.3602 | 66.4650 | 98.4635 | 87.9214 | 769 | 388 | 769 | 12 | 6 | 50.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | het | 82.2394 | 70.6494 | 98.3784 | 89.0597 | 544 | 226 | 546 | 9 | 3 | 33.3333 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | hetalt | 72.7273 | 66.6667 | 80.0000 | 96.0630 | 10 | 5 | 8 | 2 | 2 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l125_m2_e1 | homalt | 73.1293 | 57.7957 | 99.5370 | 81.0360 | 215 | 157 | 215 | 1 | 1 | 100.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | * | 74.2489 | 59.8616 | 97.7401 | 92.7340 | 173 | 116 | 173 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | het | 77.7518 | 64.8515 | 97.0588 | 93.4772 | 131 | 71 | 132 | 4 | 1 | 25.0000 | |
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 50.0000 | 100.0000 | 1 | 1 | 0 | 0 | 0 | ||||
| ckim-isaac | INDEL | D1_5 | map_l150_m0_e0 | homalt | 65.0794 | 48.2353 | 100.0000 | 84.9265 | 41 | 44 | 41 | 0 | 0 | ||