PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
19801-19850 / 86044 show all
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7892
99.7825
99.7959
36.4791
7339167335155
33.3333
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.8159
99.9133
99.7187
39.4602
461244608133
23.0769
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.7622
99.5982
99.9267
30.6657
272711272722
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.8140
90900
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.8529
70700
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
97.4684
20200
ckim-gatkSNP*map_l100_m0_e0*
82.8691
71.9040
97.7802
83.9171
2361492272361053648
8.9552
ckim-gatkSNP*map_l100_m0_e0het
86.1308
77.5383
96.8651
86.4108
1644247631643853246
8.6466
ckim-gatkSNP*map_l100_m0_e0hetalt
72.0000
56.2500
100.0000
92.1053
97900
ckim-gatkSNP*map_l100_m0_e0homalt
76.2549
61.6437
99.9442
71.4939
71634457716342
50.0000
ckim-gatkSNP*map_l100_m1_e0*
89.2398
81.7300
98.2693
78.3708
591751322859164104284
8.0614
ckim-gatkSNP*map_l100_m1_e0het
92.2588
87.5769
97.4696
81.5171
39724563539713103176
7.3715
ckim-gatkSNP*map_l100_m1_e0hetalt
78.2609
65.8537
96.4286
89.0625
27142711
100.0000
ckim-gatkSNP*map_l100_m1_e0homalt
83.6574
71.9327
99.9485
66.2938
19424757919424107
70.0000
ckim-gatkSNP*map_l100_m2_e0*
89.4294
82.0710
98.2373
79.5869
607031326160692108986
7.8972
ckim-gatkSNP*map_l100_m2_e0het
92.3834
87.8381
97.4248
82.5144
40756564340745107778
7.2423
ckim-gatkSNP*map_l100_m2_e0hetalt
78.8732
66.6667
96.5517
90.1024
28142811
100.0000
ckim-gatkSNP*map_l100_m2_e0homalt
83.9525
72.3722
99.9448
68.4557
19919760419919117
63.6364
ckim-gatkSNP*map_l100_m2_e1*
89.5170
82.2096
98.2503
79.5686
614411329661430109486
7.8611
ckim-gatkSNP*map_l100_m2_e1het
92.4550
87.9526
97.4432
82.5075
41248565041237108278
7.2089
ckim-gatkSNP*map_l100_m2_e1hetalt
79.4521
67.4419
96.6667
89.7959
29142911
100.0000
ckim-gatkSNP*map_l100_m2_e1homalt
84.0675
72.5428
99.9455
68.3772
20164763220164117
63.6364
ckim-gatkSNP*map_l125_m0_e0*
76.5382
63.0075
97.4697
89.2235
1221471711221131731
9.7792
ckim-gatkSNP*map_l125_m0_e0het
79.9330
68.2249
96.4920
90.8886
86404024863731430
9.5541
ckim-gatkSNP*map_l125_m0_e0hetalt
36.3636
22.2222
100.0000
97.9167
27200
ckim-gatkSNP*map_l125_m0_e0homalt
69.4469
53.2181
99.9161
80.0469
35723140357231
33.3333
ckim-gatkSNP*map_l125_m1_e0*
84.2159
73.9471
97.7967
84.1626
33518118093351275558
7.6821
ckim-gatkSNP*map_l125_m1_e0het
88.2494
81.0510
96.8511
86.4318
2301253802300674854
7.2193
ckim-gatkSNP*map_l125_m1_e0hetalt
75.0000
60.0000
100.0000
91.3462
18121800
ckim-gatkSNP*map_l125_m1_e0homalt
76.5547
62.0408
99.9333
74.4573
1048864171048874
57.1429
ckim-gatkSNP*map_l125_m2_e0*
84.6410
74.5907
97.8215
85.1222
34851118723484577659
7.6031
ckim-gatkSNP*map_l125_m2_e0het
88.5829
81.5915
96.8846
87.2138
2392153972391576955
7.1522
ckim-gatkSNP*map_l125_m2_e0hetalt
75.0000
60.0000
100.0000
92.8854
18121800
ckim-gatkSNP*map_l125_m2_e0homalt
77.1330
62.8029
99.9359
76.3243
1091264631091274
57.1429
ckim-gatkSNP*map_l125_m2_e1*
84.7700
74.7850
97.8324
85.1204
35300119023529478260
7.6726
ckim-gatkSNP*map_l125_m2_e1het
88.6934
81.7679
96.9006
87.2177
2423654042423077556
7.2258
ckim-gatkSNP*map_l125_m2_e1hetalt
75.0000
60.0000
100.0000
92.8854
18121800
ckim-gatkSNP*map_l125_m2_e1homalt
77.2853
63.0048
99.9367
76.2699
1104664861104674
57.1429
ckim-gatkSNP*map_l150_m0_e0*
72.2501
57.4634
97.2832
92.5200
69145118691119326
13.4715
ckim-gatkSNP*map_l150_m0_e0het
75.5141
62.1285
96.2515
93.6797
49333007493019225
13.0208
ckim-gatkSNP*map_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.7952
12100
ckim-gatkSNP*map_l150_m0_e0homalt
65.2389
48.4226
99.9495
85.6968
19802109198011
100.0000
ckim-gatkSNP*map_l150_m1_e0*
80.0337
67.8232
97.6062
88.0251
2076098492075450942
8.2515
ckim-gatkSNP*map_l150_m1_e0het
84.3543
74.8499
96.6237
89.7210
1445848581445250540
7.9208
ckim-gatkSNP*map_l150_m1_e0hetalt
70.9677
55.0000
100.0000
93.8202
1191100
ckim-gatkSNP*map_l150_m1_e0homalt
71.6189
55.8059
99.9365
80.2510
62914982629142
50.0000
ckim-gatkSNP*map_l150_m2_e0*
80.7304
68.8246
97.6170
88.6980
2192299302191653543
8.0374
ckim-gatkSNP*map_l150_m2_e0het
84.9182
75.7364
96.6335
90.2699
1524848851524253141
7.7213