PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
19751-19800 / 86044 show all
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.1481
96.3636
100.0000
90.9710
106410600
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.2628
99.1167
99.4094
87.9803
26932426931614
87.5000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.2068
99.2630
99.1506
88.9811
17511317511513
86.6667
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.3658
98.8433
99.8937
85.4985
9401194011
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4505
99.3666
99.5347
87.4509
23531523531110
90.9091
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4059
99.4716
99.3404
88.6280
150681506109
90.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
89.4737
20200
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.5289
99.1784
99.8818
84.5845
845784511
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5044
99.4538
99.5551
80.0137
1074259107424817
35.4167
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.3536
99.3753
99.3320
81.7241
68404368404615
32.6087
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
94.1176
30300
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7697
99.5913
99.9487
76.0057
389916389922
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.0661
99.2298
98.9030
75.7127
453503524535050338
7.5547
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.7785
99.2790
98.2829
78.8740
285052072850549833
6.6265
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5563
99.1458
99.9703
67.1493
168301451683055
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50*
99.7780
99.7214
99.8347
68.2340
96652796651613
81.2500
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50het
99.7595
99.7595
99.7595
70.6652
62211562211512
80.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.8333
10100
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.8116
99.6527
99.9710
62.5408
344312344311
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200*
95.0000
90.4762
100.0000
97.4342
3843800
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200het
92.0000
85.1852
100.0000
97.9261
2342300
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
95.9459
1501500
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7872
99.6565
99.9183
57.2121
171185917114148
57.1429
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8284
99.7474
99.9096
58.5102
110562811052104
40.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7119
99.4908
99.9340
54.5993
605731605744
100.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2011
99.7140
98.6934
41.6778
1813152181282403
1.2500
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.8341
99.7463
97.9383
44.8790
1140429114012403
1.2500
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
50500
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.8292
99.6590
100.0000
35.1158
672223672200
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200*
94.6237
92.3077
97.0588
92.7312
1321113243
75.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200het
95.0495
94.1176
96.0000
92.5540
9669643
75.0000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
93.5065
87.8049
100.0000
93.1818
3653600
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNP*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000