PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
19701-19750 / 86044 show all
ckim-gatkSNP*HG002complexvar*
99.5695
99.1746
99.9675
19.4723
7481546227748002243101
41.5638
ckim-gatkSNP*HG002complexvarhet
99.7401
99.5255
99.9558
19.1024
463288220946316020569
33.6585
ckim-gatkSNP*HG002complexvarhetalt
98.0328
96.4516
99.6667
39.8798
2991129911
100.0000
ckim-gatkSNP*HG002complexvarhomalt
99.2945
98.6114
99.9870
20.0389
28456740072845433731
83.7838
ckim-gatkSNP*HG002compoundhet*
99.3973
99.0009
99.7970
41.7198
25564258255615238
73.0769
ckim-gatkSNP*HG002compoundhethet
99.3772
99.0478
99.7088
46.6510
14043135140414128
68.2927
ckim-gatkSNP*HG002compoundhethetalt
98.8856
97.7958
100.0000
22.8728
8431984300
ckim-gatkSNP*HG002compoundhethomalt
99.4644
99.0354
99.8971
35.0629
10678104106771110
90.9091
ckim-gatkSNP*decoy*
0.0000
100.0000
00000
ckim-gatkSNP*decoyhet
0.0000
100.0000
00000
ckim-gatkSNP*decoyhetalt
0.0000
100.0000
00000
ckim-gatkSNP*decoyhomalt
0.0000
100.0000
00000
ckim-gatkSNP*func_cds*
99.6618
99.8678
99.4567
31.5863
181262418123991
1.0101
ckim-gatkSNP*func_cdshet
99.5225
99.9283
99.1199
36.5539
11153811150991
1.0101
ckim-gatkSNP*func_cdshetalt
100.0000
100.0000
100.0000
61.5385
1001000
ckim-gatkSNP*func_cdshomalt
99.8852
99.7707
100.0000
21.5790
696316696300
ckim-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1690
98.9505
99.3886
67.1606
47145047142910
34.4828
ckim-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.8872
98.7069
99.0682
69.8958
2977392977289
32.1429
ckim-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6558
99.3707
99.9425
60.9877
173711173711
100.0000
ckim-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5960
99.7232
99.4692
61.2535
554771545546629629
9.7973
ckim-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4847
99.7826
99.1887
63.5467
35342773533128922
7.6125
ckim-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.3333
1211200
ckim-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7942
99.6237
99.9652
56.3615
20123762012377
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.0661
99.2298
98.9030
75.7127
453503524535050338
7.5547
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.7785
99.2790
98.2829
78.8740
285052072850549833
6.6265
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5563
99.1458
99.9703
67.1493
168301451683055
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4172
99.3015
99.5333
49.8126
4265304265203
15.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.1612
99.0320
99.2908
52.9835
2660262660192
10.5263
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8445
99.7514
99.9377
43.4109
16054160511
100.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7416
99.8545
99.6289
56.0363
617596175232
8.6957
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6319
99.8474
99.4174
58.2620
392563925232
8.6957
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9333
99.8668
100.0000
51.4674
22493224900
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8455
99.9742
99.7171
60.4476
387713877110
0.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7800
100.0000
99.5609
62.1372
249402494110
0.0000
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
56.9470
13821138200
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.5163
96.6321
98.4169
91.0275
3731337364
66.6667
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.2678
96.7391
97.8022
91.0404
267926764
66.6667