PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
19501-19550 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 93.3540 | 87.6993 | 99.7881 | 34.6260 | 385 | 54 | 471 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 94.7368 | 99.2126 | 90.6475 | 53.5117 | 126 | 1 | 126 | 13 | 12 | 92.3077 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7528 | 100.0000 | 95.6044 | 85.5326 | 87 | 0 | 87 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.9697 | 100.0000 | 94.1176 | 88.1119 | 52 | 0 | 48 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 55.5556 | 12 | 0 | 16 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 85.3659 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 97.0588 | 97.0588 | 97.0588 | 96.9133 | 66 | 2 | 66 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 95.4545 | 95.4545 | 95.4545 | 96.8594 | 42 | 2 | 42 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.7612 | 15 | 0 | 15 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0078 | 98.8530 | 99.1632 | 72.8794 | 948 | 11 | 948 | 8 | 6 | 75.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4888 | 99.5012 | 99.4764 | 82.1911 | 399 | 2 | 380 | 2 | 1 | 50.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.1793 | 97.2561 | 99.1202 | 37.6600 | 319 | 9 | 338 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3521 | 100.0000 | 98.7124 | 72.0288 | 230 | 0 | 230 | 3 | 2 | 66.6667 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.8986 | 96.7532 | 97.0443 | 67.8288 | 596 | 20 | 591 | 18 | 16 | 88.8889 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 95.4462 | 99.3902 | 91.8033 | 88.0275 | 163 | 1 | 112 | 10 | 8 | 80.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7378 | 94.8571 | 98.6945 | 34.1924 | 332 | 18 | 378 | 5 | 5 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.0583 | 99.0196 | 97.1154 | 64.3836 | 101 | 1 | 101 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3671 | 100.0000 | 98.7421 | 70.8257 | 157 | 0 | 157 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3051 | 100.0000 | 96.6667 | 82.3529 | 61 | 0 | 58 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 22.8571 | 51 | 0 | 54 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 45 | 0 | 45 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | * | 94.5055 | 93.4783 | 95.5556 | 67.1533 | 43 | 3 | 43 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | het | 77.4194 | 75.0000 | 80.0000 | 92.1875 | 6 | 2 | 4 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 97.9592 | 96.0000 | 100.0000 | 42.2222 | 24 | 1 | 26 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 50.0000 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 88.1356 | 92.8571 | 83.8710 | 97.1001 | 26 | 2 | 26 | 5 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 87.3039 | 94.7368 | 80.9524 | 97.4042 | 18 | 1 | 17 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.3617 | 4 | 0 | 5 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.6526 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | * | 89.3855 | 91.9540 | 86.9565 | 95.3252 | 80 | 7 | 80 | 12 | 4 | 33.3333 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | het | 87.7958 | 95.6522 | 81.1321 | 96.3322 | 44 | 2 | 43 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 76.7677 | 22 | 4 | 23 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 96.2264 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | * | 89.7297 | 92.2222 | 87.3684 | 95.8533 | 83 | 7 | 83 | 12 | 4 | 33.3333 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | het | 88.0766 | 95.8333 | 81.4815 | 96.7606 | 46 | 2 | 44 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 91.6667 | 84.6154 | 100.0000 | 77.5701 | 22 | 4 | 24 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 96.7118 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | * | 89.8990 | 91.7526 | 88.1188 | 95.6893 | 89 | 8 | 89 | 12 | 4 | 33.3333 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | het | 88.7476 | 96.0784 | 82.4561 | 96.6569 | 49 | 2 | 47 | 10 | 4 | 40.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 90.9091 | 83.3333 | 100.0000 | 76.7241 | 25 | 5 | 27 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 96.7433 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.6351 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.6596 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 2 | 0 | 0 | ||