PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18951-19000 / 86044 show all
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.5192
99.0431
100.0000
47.9899
414441400
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50het
99.1736
98.3607
100.0000
63.0435
120211900
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
99.5763
99.1561
100.0000
23.6246
235223600
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
64.2424
5905900
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
67.5000
1301300
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
10000
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
100.0000
100.0000
100.0000
35.0000
1201300
ckim-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15map_l100_m0_e0*
92.3077
90.9091
93.7500
93.5223
3033021
50.0000
ckim-gatkINDELI6_15map_l100_m0_e0het
91.4286
94.1176
88.8889
94.6903
1611621
50.0000
ckim-gatkINDELI6_15map_l100_m0_e0hetalt
85.7143
75.0000
100.0000
90.0000
31300
ckim-gatkINDELI6_15map_l100_m0_e0homalt
95.6522
91.6667
100.0000
91.2000
1111100
ckim-gatkINDELI6_15map_l100_m1_e0*
96.4602
95.6140
97.3214
89.5814
109510931
33.3333
ckim-gatkINDELI6_15map_l100_m1_e0het
95.7983
96.6102
95.0000
91.2152
5725731
33.3333
ckim-gatkINDELI6_15map_l100_m1_e0hetalt
95.2381
90.9091
100.0000
80.0000
2022000
ckim-gatkINDELI6_15map_l100_m1_e0homalt
98.4615
96.9697
100.0000
89.0411
3213200
ckim-gatkINDELI6_15map_l100_m2_e0*
96.5217
95.6897
97.3684
90.3635
111511131
33.3333
ckim-gatkINDELI6_15map_l100_m2_e0het
95.9350
96.7213
95.1613
91.7663
5925931
33.3333
ckim-gatkINDELI6_15map_l100_m2_e0hetalt
95.2381
90.9091
100.0000
81.6514
2022000
ckim-gatkINDELI6_15map_l100_m2_e0homalt
98.4615
96.9697
100.0000
90.0312
3213200
ckim-gatkINDELI6_15map_l100_m2_e1*
96.5217
95.6897
97.3684
90.5863
111511131
33.3333
ckim-gatkINDELI6_15map_l100_m2_e1het
95.9350
96.7213
95.1613
91.9585
5925931
33.3333
ckim-gatkINDELI6_15map_l100_m2_e1hetalt
95.2381
90.9091
100.0000
82.3009
2022000
ckim-gatkINDELI6_15map_l100_m2_e1homalt
98.4615
96.9697
100.0000
90.2141
3213200
ckim-gatkINDELI6_15map_l125_m0_e0*
86.6667
86.6667
86.6667
96.0212
1321321
50.0000
ckim-gatkINDELI6_15map_l125_m0_e0het
84.2105
88.8889
80.0000
96.2264
81821
50.0000
ckim-gatkINDELI6_15map_l125_m0_e0hetalt
0.0000
100.0000
00000
ckim-gatkINDELI6_15map_l125_m0_e0homalt
90.9091
83.3333
100.0000
94.5652
51500
ckim-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.7742
10100
ckim-gatkINDELD1_5lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3769
20200
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.3055
99.0812
99.5308
74.4619
6383959263852301259
86.0465
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6452
99.7262
99.5644
75.3068
331459133139145104
71.7241
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
97.1124
94.7719
99.5714
64.0050
881048688293838
100.0000
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6970
99.9315
99.4637
76.0277
218841521884118117
99.1525
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.3847
97.8381
98.9375
61.5106
3072967930729330295
89.3939
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.1021
99.2658
98.9390
69.0925
1365610113614146113
77.3973
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
96.6722
93.9296
99.5798
30.8791
872756487693737
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.0447
99.8325
98.2692
63.7593
8346148346147145
98.6395
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.8218
97.2441
98.4064
67.2181
74121741127
58.3333
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
98.3982
98.8506
97.9499
70.1564
430543094
44.4444
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
89.6000
81.1594
100.0000
52.5424
56135600
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8372
98.8372
98.8372
63.5593
255325533
100.0000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
98.9648
1001000
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
98.8854
70700
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
96.1538
10100
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
99.3590
20200
ckim-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4812
99.4812
99.4812
78.2296
15348153485
62.5000