PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18751-18800 / 86044 show all
ckim-gatkSNPtimap_l250_m2_e1*
71.4464
56.3436
97.6109
96.1177
286022162860709
12.8571
ckim-gatkSNPtimap_l250_m2_e1het
74.6885
60.8669
96.6314
96.6914
200812912008709
12.8571
ckim-gatkSNPtimap_l250_m2_e1hetalt
33.3333
20.0000
100.0000
98.7654
14100
ckim-gatkSNPtimap_l250_m2_e1homalt
64.8875
48.0248
100.0000
93.2374
85192185100
ckim-gatkSNPtimap_siren*
94.6168
90.5675
99.0452
64.7326
9088994669087487696
10.9589
ckim-gatkSNPtimap_sirenhet
96.2259
94.0079
98.5512
68.8261
5864437385863586283
9.6288
ckim-gatkSNPtimap_sirenhetalt
87.6190
80.7018
95.8333
80.9524
46114622
100.0000
ckim-gatkSNPtimap_sirenhomalt
91.8305
84.9219
99.9627
53.3585
321995717321931211
91.6667
ckim-gatkSNPtisegdup*
98.9344
99.3295
98.5425
92.9771
19406131194042878
2.7875
ckim-gatkSNPtisegduphet
98.6041
99.5428
97.6830
94.4043
1197555119732845
1.7606
ckim-gatkSNPtisegduphetalt
100.0000
100.0000
100.0000
99.2453
20200
ckim-gatkSNPtisegduphomalt
99.4711
98.9873
99.9596
87.8310
742976742933
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50het
99.6807
99.5745
99.7872
69.5003
468246911
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
97.7124
95.5272
100.0000
30.1402
2991429900
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.6269
100.0000
99.2565
66.2060
267026722
100.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200*
96.0000
96.0000
96.0000
62.6866
2412410
0.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200het
80.0000
100.0000
66.6667
91.8919
20210
0.0000
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200hetalt
97.7778
95.6522
100.0000
8.3333
2212200
ckim-gatkINDELI1_5lowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
ckim-gatkINDELI1_5map_l100_m0_e0*
97.3834
99.0792
95.7447
89.2325
5385540243
12.5000
ckim-gatkINDELI1_5map_l100_m0_e0het
96.2697
98.4663
94.1691
91.3906
3215323200
0.0000
ckim-gatkINDELI1_5map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
93.0233
90900
ckim-gatkINDELI1_5map_l100_m0_e0homalt
99.0476
100.0000
98.1132
81.1556
208020843
75.0000
ckim-gatkINDELI1_5map_l100_m1_e0*
97.9664
98.7304
97.2141
87.0980
1322171326385
13.1579
ckim-gatkINDELI1_5map_l100_m1_e0het
97.0881
98.3269
95.8801
89.2469
76413768331
3.0303
ckim-gatkINDELI1_5map_l100_m1_e0hetalt
96.4706
93.1818
100.0000
88.4507
4134100
ckim-gatkINDELI1_5map_l100_m1_e0homalt
99.4231
99.8069
99.0421
81.1416
517151754
80.0000
ckim-gatkINDELI1_5map_l100_m2_e0*
98.0091
98.7573
97.2721
88.0110
1351171355385
13.1579
ckim-gatkINDELI1_5map_l100_m2_e0het
97.1459
98.3607
95.9608
90.0195
78013784331
3.0303
ckim-gatkINDELI1_5map_l100_m2_e0hetalt
96.4706
93.1818
100.0000
89.3782
4134100
ckim-gatkINDELI1_5map_l100_m2_e0homalt
99.4371
99.8117
99.0654
82.4417
530153054
80.0000
ckim-gatkINDELI1_5map_l100_m2_e1*
98.0472
98.7814
97.3239
88.0481
1378171382385
13.1579
ckim-gatkINDELI1_5map_l100_m2_e1het
97.2049
98.3951
96.0432
90.0501
79713801331
3.0303
ckim-gatkINDELI1_5map_l100_m2_e1hetalt
96.5517
93.3333
100.0000
89.3401
4234200
ckim-gatkINDELI1_5map_l100_m2_e1homalt
99.4465
99.8148
99.0809
82.4799
539153954
80.0000
ckim-gatkINDELI1_5map_l125_m0_e0*
96.5389
98.7097
94.4615
92.2711
3064307182
11.1111
ckim-gatkINDELI1_5map_l125_m0_e0het
95.2090
97.9167
92.6471
93.7748
1884189150
0.0000
ckim-gatkINDELI1_5map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
95.7447
40400
ckim-gatkINDELI1_5map_l125_m0_e0homalt
98.7013
100.0000
97.4359
85.9712
114011432
66.6667
ckim-gatkINDELI1_5map_l125_m1_e0*
97.7394
98.7952
96.7059
89.6278
82010822283
10.7143
ckim-gatkINDELI1_5map_l125_m1_e0het
96.5689
98.1481
95.0397
91.4793
4779479251
4.0000
ckim-gatkINDELI1_5map_l125_m1_e0hetalt
100.0000
100.0000
100.0000
93.0612
1701700
ckim-gatkINDELI1_5map_l125_m1_e0homalt
99.3902
99.6942
99.0881
83.8329
326132632
66.6667
ckim-gatkINDELI1_5map_l125_m2_e0*
97.7534
98.8331
96.6970
90.4503
84710849293
10.3448
ckim-gatkINDELI1_5map_l125_m2_e0het
96.5482
98.1891
94.9612
92.2054
4889490261
3.8462
ckim-gatkINDELI1_5map_l125_m2_e0hetalt
100.0000
100.0000
100.0000
93.2143
1901900
ckim-gatkINDELI1_5map_l125_m2_e0homalt
99.4152
99.7067
99.1254
85.0480
340134032
66.6667
ckim-gatkINDELI1_5map_l125_m2_e1*
97.7866
98.8506
96.7452
90.5203
86010862293
10.3448
ckim-gatkINDELI1_5map_l125_m2_e1het
96.6215
98.2283
95.0664
92.2237
4999501261
3.8462
ckim-gatkINDELI1_5map_l125_m2_e1hetalt
100.0000
100.0000
100.0000
93.3333
1901900