PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18701-18750 / 86044 show all
ckim-gatkSNPtimap_l100_m2_e0hetalt
80.7692
70.0000
95.4545
88.0435
2192111
100.0000
ckim-gatkSNPtimap_l100_m2_e0homalt
84.7018
73.4994
99.9332
67.2925
1345748521345797
77.7778
ckim-gatkSNPtimap_l100_m2_e1*
90.0482
82.8877
98.5628
78.3843
4101784684101059870
11.7057
ckim-gatkSNPtimap_l100_m2_e1het
92.9104
88.4076
97.8964
81.4552
2737135892736458862
10.5442
ckim-gatkSNPtimap_l100_m2_e1hetalt
81.4815
70.9677
95.6522
87.5676
2292211
100.0000
ckim-gatkSNPtimap_l100_m2_e1homalt
84.8134
73.6671
99.9340
67.2110
1362448701362497
77.7778
ckim-gatkSNPtimap_l125_m0_e0*
77.0822
63.5950
97.8298
88.5344
81164646811418023
12.7778
ckim-gatkSNPtimap_l125_m0_e0het
80.6416
69.0185
96.9723
90.3096
57032560570117822
12.3596
ckim-gatkSNPtimap_l125_m0_e0hetalt
40.0000
25.0000
100.0000
96.9697
26200
ckim-gatkSNPtimap_l125_m0_e0homalt
69.8436
53.6851
99.9171
79.2054
24112080241121
50.0000
ckim-gatkSNPtimap_l125_m1_e0*
84.6397
74.3855
98.1731
83.5274
2182175142181740644
10.8374
ckim-gatkSNPtimap_l125_m1_e0het
88.7011
81.4464
97.3746
85.8996
1487733891487340140
9.9751
ckim-gatkSNPtimap_l125_m1_e0hetalt
76.9231
62.5000
100.0000
88.3721
1591500
ckim-gatkSNPtimap_l125_m1_e0homalt
77.0788
62.7343
99.9279
73.7914
69294116692954
80.0000
ckim-gatkSNPtimap_l125_m2_e0*
85.0542
75.0248
98.1789
84.5122
2270175572269742145
10.6888
ckim-gatkSNPtimap_l125_m2_e0het
89.0209
81.9824
97.3815
86.6933
1547534011547141641
9.8558
ckim-gatkSNPtimap_l125_m2_e0hetalt
76.9231
62.5000
100.0000
90.5063
1591500
ckim-gatkSNPtimap_l125_m2_e0homalt
77.6462
63.4883
99.9307
75.7176
72114147721154
80.0000
ckim-gatkSNPtimap_l125_m2_e1*
85.1950
75.2331
98.1978
84.5085
2299875712299442245
10.6635
ckim-gatkSNPtimap_l125_m2_e1het
89.1406
82.1659
97.4093
86.6958
1568334041567941741
9.8321
ckim-gatkSNPtimap_l125_m2_e1hetalt
76.9231
62.5000
100.0000
90.5063
1591500
ckim-gatkSNPtimap_l125_m2_e1homalt
77.8127
63.7109
99.9316
75.6597
73004158730054
80.0000
ckim-gatkSNPtimap_l150_m0_e0*
72.8820
58.1733
97.5459
92.0553
45733288457111519
16.5217
ckim-gatkSNPtimap_l150_m0_e0het
76.3401
63.1156
96.5755
93.3356
32171880321511418
15.7895
ckim-gatkSNPtimap_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.2143
12100
ckim-gatkSNPtimap_l150_m0_e0homalt
65.8246
49.0764
99.9263
84.8914
13551406135511
100.0000
ckim-gatkSNPtimap_l150_m1_e0*
80.5127
68.3289
97.9843
87.5524
1346962431346527734
12.2744
ckim-gatkSNPtimap_l150_m1_e0het
84.9286
75.4406
97.1464
89.3093
93323038932827432
11.6788
ckim-gatkSNPtimap_l150_m1_e0hetalt
75.0000
60.0000
100.0000
91.7431
96900
ckim-gatkSNPtimap_l150_m1_e0homalt
72.0545
56.3396
99.9274
79.8232
41283199412832
66.6667
ckim-gatkSNPtimap_l150_m2_e0*
81.1968
69.3155
97.9938
88.2579
1421862941421429135
12.0275
ckim-gatkSNPtimap_l150_m2_e0het
85.4716
76.2984
97.1519
89.8925
98283053982428833
11.4583
ckim-gatkSNPtimap_l150_m2_e0hetalt
75.0000
60.0000
100.0000
93.0233
96900
ckim-gatkSNPtimap_l150_m2_e0homalt
73.0167
57.5236
99.9316
81.2297
43813235438132
66.6667
ckim-gatkSNPtimap_l150_m2_e1*
81.3077
69.4784
97.9917
88.2788
1439863251439429535
11.8644
ckim-gatkSNPtimap_l150_m2_e1het
85.5750
76.4656
97.1484
89.9190
99523063994829233
11.3014
ckim-gatkSNPtimap_l150_m2_e1hetalt
75.0000
60.0000
100.0000
93.0233
96900
ckim-gatkSNPtimap_l150_m2_e1homalt
73.1394
57.6758
99.9324
81.1976
44373256443732
66.6667
ckim-gatkSNPtimap_l250_m0_e0*
64.2229
47.9562
97.1893
97.9938
657713657192
10.5263
ckim-gatkSNPtimap_l250_m0_e0het
65.2051
49.3576
96.0417
98.3380
461473461192
10.5263
ckim-gatkSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
ckim-gatkSNPtimap_l250_m0_e0homalt
62.0253
44.9541
100.0000
95.9004
19624019600
ckim-gatkSNPtimap_l250_m1_e0*
69.7981
54.3568
97.4931
96.0316
248920902489648
12.5000
ckim-gatkSNPtimap_l250_m1_e0het
72.9254
58.6253
96.4523
96.6462
174012281740648
12.5000
ckim-gatkSNPtimap_l250_m1_e0hetalt
0.0000
100.0000
04000
ckim-gatkSNPtimap_l250_m1_e0homalt
63.5823
46.6086
100.0000
92.8517
74985874900
ckim-gatkSNPtimap_l250_m2_e0*
71.3054
56.1701
97.6058
96.1011
281321952813699
13.0435
ckim-gatkSNPtimap_l250_m2_e0het
74.5328
60.6638
96.6226
96.6749
197412801974699
13.0435
ckim-gatkSNPtimap_l250_m2_e0hetalt
33.3333
20.0000
100.0000
98.7654
14100
ckim-gatkSNPtimap_l250_m2_e0homalt
64.7855
47.9131
100.0000
93.2398
83891183800