PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18651-18700 / 86044 show all
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.1543
99.2037
99.1050
72.6597
308952483089527924
8.6022
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.9363
99.2849
98.5900
75.9853
194391401943927823
8.2734
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.7273
1201200
ckim-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5260
99.0651
99.9913
63.9562
114441081144411
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.8448
99.7726
99.9172
69.6417
482611482643
75.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50het
99.8252
99.7776
99.8728
71.9221
31417314143
75.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
95.0000
10100
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8814
99.7630
100.0000
64.0862
16844168400
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200*
96.7742
93.7500
100.0000
97.8754
1511500
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200het
94.7368
90.0000
100.0000
98.3051
91900
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200homalt
100.0000
100.0000
100.0000
96.5517
60600
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.7923
99.6650
99.9200
46.9810
624721624753
60.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.7906
99.6556
99.9260
49.2362
405114405131
33.3333
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
80.0000
20200
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7953
99.6820
99.9089
42.1496
21947219422
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50*
99.4564
99.7391
99.1754
42.0292
107042810704892
2.2472
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.2183
99.7479
98.6942
45.7109
6727176727892
2.2472
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
85.7143
10100
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.8619
99.7241
100.0000
34.3461
397611397600
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200*
93.8776
91.0891
96.8421
93.5680
9299233
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200het
94.6565
93.9394
95.3846
93.7500
6246233
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
85.7143
100.0000
93.1350
3053000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7823
99.7440
99.8206
33.3561
389610389573
42.8571
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.8184
99.8386
99.7982
36.6402
24744247351
20.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.7545
99.6496
99.8596
26.6735
14225142222
100.0000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.4828
80800
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
92.4051
60600
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
96.9697
20200
ckim-gatkSNPtimap_l100_m0_e0*
83.4318
72.5369
98.1781
82.8871
1579259791578929337
12.6280
ckim-gatkSNPtimap_l100_m0_e0het
86.7938
78.2593
97.4176
85.5089
1094330401094029035
12.0690
ckim-gatkSNPtimap_l100_m0_e0hetalt
72.7273
57.1429
100.0000
90.0000
86800
ckim-gatkSNPtimap_l100_m0_e0homalt
76.7317
62.2717
99.9381
70.4634
48412933484132
66.6667
ckim-gatkSNPtimap_l100_m1_e0*
89.7917
82.4352
98.5900
77.1488
3951284193950556568
12.0354
ckim-gatkSNPtimap_l100_m1_e0het
92.7314
88.0536
97.9342
80.4366
2636535772635855660
10.7914
ckim-gatkSNPtimap_l100_m1_e0hetalt
80.0000
68.9655
95.2381
87.2727
2092011
100.0000
ckim-gatkSNPtimap_l100_m1_e0homalt
84.4316
73.0902
99.9391
65.0795
1312748331312787
87.5000
ckim-gatkSNPtimap_l100_m2_e0*
89.9645
82.7516
98.5549
78.4080
4051684454050959470
11.7845
ckim-gatkSNPtimap_l100_m2_e0het
92.8437
88.2960
97.8852
81.4673
2703835842703158462
10.6164