PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
18051-18100 / 86044 show all
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
92.9687
87.2567
99.4808
35.1295
237634724911313
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
93.4878
98.9848
88.5693
60.4017
1170121170151149
98.6755
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
97.5806
30300
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.7273
20200
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
96.1538
10100
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
97.4678
96.9896
97.9508
56.0360
36761114136567765735
96.0784
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
98.1904
98.9943
97.3994
67.4787
1447014714082376350
93.0851
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
96.1540
92.9308
99.6088
28.2869
12791973129855151
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1456
99.7794
96.5643
55.8438
9500219500338334
98.8166
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1527
97.7494
98.5592
55.1204
3127272031194456439
96.2719
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.7777
99.3930
98.1700
65.9733
124457612285229215
93.8865
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
96.8922
94.2909
99.6412
27.0291
10471634105533838
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8233
99.8805
97.7882
55.5665
8356108356189186
98.4127
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.6448
97.1963
98.0976
61.8032
42120121541922813755
92.8659
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
98.3348
98.9955
97.6830
71.3901
1764017917243409359
87.7751
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
96.0921
92.8093
99.6158
30.7146
130231009132225151
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.3687
99.7649
97.0110
61.9339
114572711457353345
97.7337
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.0533
97.6374
98.4728
67.8136
63807154463576986844
85.5984
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.6351
98.9928
98.2801
74.5158
3017330729714520391
75.1923
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.1399
92.8943
99.6204
36.5756
155181187157466060
100.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7571
99.7248
97.8080
67.5218
181165018116406393
96.7980
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50*
98.2317
97.7700
98.6978
52.2722
3577681635699471434
92.1444
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.9501
99.4036
98.5008
62.9678
156669415506236204
86.4407
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50hetalt
96.2854
93.2411
99.5352
28.3262
976770898504646
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.0282
99.8648
98.2055
45.9010
103431410343189184
97.3545
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200*
85.8873
84.9119
86.8852
57.3613
17843171696256250
97.6562
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200het
77.8473
92.4490
67.2289
80.6707
45337279136131
96.3235
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200hetalt
87.5183
78.0351
99.6251
29.7101
977275106344
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_diTR_51to200homalt
85.4041
98.6072
75.3191
48.5214
3545354116115
99.1379
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.7343
99.6285
99.8404
58.9273
28155105281584520
44.4444
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8174
99.8052
99.8295
60.0496
163973216396284
14.2857
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
92.8310
87.1028
99.3658
71.0526
4666947033
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9204
99.9646
99.8762
56.3829
112924112921413
92.8571
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10*
95.9513
95.9677
95.9350
99.9185
119511850
0.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10het
94.2194
94.2529
94.1860
99.8927
8258150
0.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
100.0000
100.0000
100.0000
99.8797
1601600
ckim-gatkINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
100.0000
100.0000
100.0000
99.9634
2102100
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.3059
99.0585
99.5546
59.8847
19675187196688846
52.2727
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.5405
99.5949
99.4862
63.6798
1106345110375716
28.0702
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50hetalt
97.2092
94.7800
99.7663
39.0116
2542140256166
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7781
99.9671
99.5898
57.9481
6070260702524
96.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200*
97.3063
96.6102
98.0125
68.8327
25659025155139
76.4706
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200het
97.0978
97.8306
96.3760
82.9898
947218513222
68.7500
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200hetalt
96.7955
94.3933
99.3232
30.5115
112867117488
100.0000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
98.6908
99.5935
97.8044
62.6398
4902490119
81.8182
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
ckim-gatkINDEL*lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000