PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17801-17850 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | * | map_l125_m0_e0 | * | 95.2938 | 98.5261 | 92.2669 | 92.7054 | 869 | 13 | 871 | 73 | 6 | 8.2192 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | het | 93.6867 | 98.2964 | 89.4900 | 93.6438 | 577 | 10 | 579 | 68 | 2 | 2.9412 | |
| ckim-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 95.2381 | 90.9091 | 100.0000 | 95.5556 | 10 | 1 | 10 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m0_e0 | homalt | 98.7741 | 99.2958 | 98.2578 | 88.6874 | 282 | 2 | 282 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | * | 96.6080 | 98.5287 | 94.7608 | 90.7066 | 2076 | 31 | 2080 | 115 | 11 | 9.5652 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | het | 95.3358 | 98.5019 | 92.3669 | 91.9308 | 1315 | 20 | 1319 | 109 | 7 | 6.4220 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 93.3333 | 87.5000 | 100.0000 | 93.0556 | 35 | 5 | 35 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m1_e0 | homalt | 99.1803 | 99.1803 | 99.1803 | 86.4895 | 726 | 6 | 726 | 6 | 4 | 66.6667 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | * | 96.6334 | 98.5428 | 94.7967 | 91.3207 | 2164 | 32 | 2168 | 119 | 11 | 9.2437 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | het | 95.3815 | 98.4903 | 92.4630 | 92.4771 | 1370 | 21 | 1374 | 112 | 7 | 6.2500 | |
| ckim-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 93.6709 | 88.0952 | 100.0000 | 93.5875 | 37 | 5 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m2_e0 | homalt | 99.1487 | 99.2136 | 99.0838 | 87.3090 | 757 | 6 | 757 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | * | map_l125_m2_e1 | * | 96.6536 | 98.5169 | 94.8596 | 91.3812 | 2192 | 33 | 2196 | 119 | 11 | 9.2437 | |
| ckim-gatk | INDEL | * | map_l125_m2_e1 | het | 95.4354 | 98.5085 | 92.5482 | 92.5354 | 1387 | 21 | 1391 | 112 | 7 | 6.2500 | |
| ckim-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.5000 | 86.0465 | 100.0000 | 93.7075 | 37 | 6 | 37 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l125_m2_e1 | homalt | 99.1607 | 99.2248 | 99.0968 | 87.3717 | 768 | 6 | 768 | 7 | 4 | 57.1429 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | * | 94.2458 | 98.4436 | 90.3915 | 94.6603 | 506 | 8 | 508 | 54 | 4 | 7.4074 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | het | 92.1979 | 98.2405 | 86.8557 | 95.3544 | 335 | 6 | 337 | 51 | 1 | 1.9608 | |
| ckim-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 95.4286 | 8 | 1 | 8 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m0_e0 | homalt | 98.7879 | 99.3902 | 98.1928 | 91.6917 | 163 | 1 | 163 | 3 | 3 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l150_m1_e0 | * | 95.5806 | 98.3558 | 92.9577 | 92.6180 | 1316 | 22 | 1320 | 100 | 9 | 9.0000 | |
| ckim-gatk | INDEL | * | map_l150_m1_e0 | het | 93.9968 | 98.4795 | 89.9044 | 93.5685 | 842 | 13 | 846 | 95 | 6 | 6.3158 | |
| ckim-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.3846 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m1_e0 | homalt | 98.8082 | 98.7013 | 98.9154 | 89.0629 | 456 | 6 | 456 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | * | 95.7609 | 98.4375 | 93.2260 | 93.1205 | 1386 | 22 | 1390 | 101 | 9 | 8.9109 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | het | 94.2693 | 98.5651 | 90.3323 | 93.9690 | 893 | 13 | 897 | 96 | 6 | 6.2500 | |
| ckim-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.3077 | 85.7143 | 100.0000 | 95.9821 | 18 | 3 | 18 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m2_e0 | homalt | 98.8554 | 98.7526 | 98.9583 | 89.9160 | 475 | 6 | 475 | 5 | 3 | 60.0000 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | * | 95.7468 | 98.3322 | 93.2939 | 93.1304 | 1415 | 24 | 1419 | 102 | 10 | 9.8039 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | het | 94.3211 | 98.4848 | 90.4950 | 93.9981 | 910 | 14 | 914 | 96 | 6 | 6.2500 | |
| ckim-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 90.4762 | 82.6087 | 100.0000 | 95.8515 | 19 | 4 | 19 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l150_m2_e1 | homalt | 98.7805 | 98.7805 | 98.7805 | 89.8661 | 486 | 6 | 486 | 6 | 4 | 66.6667 | |
| ckim-gatk | INDEL | * | map_l250_m0_e0 | * | 84.7458 | 96.1538 | 75.7576 | 98.3736 | 75 | 3 | 75 | 24 | 2 | 8.3333 | |
| ckim-gatk | INDEL | * | map_l250_m0_e0 | het | 80.3150 | 96.2264 | 68.9189 | 98.4901 | 51 | 2 | 51 | 23 | 1 | 4.3478 | |
| ckim-gatk | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.7085 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | * | 91.9255 | 97.0492 | 87.3156 | 97.0758 | 296 | 9 | 296 | 43 | 4 | 9.3023 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | het | 88.9423 | 97.3684 | 81.8584 | 97.5127 | 185 | 5 | 185 | 41 | 2 | 4.8781 | |
| ckim-gatk | INDEL | * | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m1_e0 | homalt | 98.1651 | 98.1651 | 98.1651 | 95.2464 | 107 | 2 | 107 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | * | 92.5287 | 97.2810 | 88.2192 | 97.2498 | 322 | 9 | 322 | 43 | 4 | 9.3023 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | het | 89.9123 | 97.6190 | 83.3333 | 97.6273 | 205 | 5 | 205 | 41 | 2 | 4.8781 | |
| ckim-gatk | INDEL | * | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e0 | homalt | 98.2609 | 98.2609 | 98.2609 | 95.6538 | 113 | 2 | 113 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | * | map_l250_m2_e1 | * | 92.5714 | 97.2973 | 88.2834 | 97.3082 | 324 | 9 | 324 | 43 | 4 | 9.3023 | |
| ckim-gatk | INDEL | * | map_l250_m2_e1 | het | 89.9563 | 97.6303 | 83.4008 | 97.6831 | 206 | 5 | 206 | 41 | 2 | 4.8781 | |
| ckim-gatk | INDEL | * | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4791 | 4 | 2 | 4 | 0 | 0 | ||
| ckim-gatk | INDEL | * | map_l250_m2_e1 | homalt | 98.2759 | 98.2759 | 98.2759 | 95.7196 | 114 | 2 | 114 | 2 | 2 | 100.0000 | |
| ckim-gatk | INDEL | * | map_siren | * | 98.0865 | 98.7854 | 97.3974 | 85.2125 | 7320 | 90 | 7335 | 196 | 24 | 12.2449 | |
| ckim-gatk | INDEL | * | map_siren | het | 97.5443 | 99.0018 | 96.1290 | 86.6172 | 4463 | 45 | 4470 | 180 | 15 | 8.3333 | |