PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
17701-17750 / 86044 show all | |||||||||||||||
| ckim-gatk | SNP | tv | map_l100_m1_e0 | * | 88.1419 | 80.3355 | 97.6286 | 80.4620 | 19683 | 4818 | 19679 | 478 | 17 | 3.5565 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | het | 91.3400 | 86.6511 | 96.5654 | 83.3110 | 13359 | 2058 | 13355 | 475 | 16 | 3.3684 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | hetalt | 78.2609 | 65.8537 | 96.4286 | 89.0625 | 27 | 14 | 27 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m1_e0 | homalt | 82.0884 | 69.6340 | 99.9682 | 68.5726 | 6297 | 2746 | 6297 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | * | 88.3659 | 80.7254 | 97.6039 | 81.5961 | 20208 | 4825 | 20204 | 496 | 17 | 3.4274 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | het | 91.4895 | 86.9494 | 96.5299 | 84.2447 | 13718 | 2059 | 13714 | 493 | 16 | 3.2454 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | hetalt | 78.8732 | 66.6667 | 96.5517 | 90.1024 | 28 | 14 | 28 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e0 | homalt | 82.4340 | 70.1324 | 99.9691 | 70.6315 | 6462 | 2752 | 6462 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4609 | 80.8686 | 97.6264 | 81.5863 | 20446 | 4837 | 20442 | 497 | 17 | 3.4205 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | het | 91.5697 | 87.0686 | 96.5616 | 84.2465 | 13877 | 2061 | 13873 | 494 | 16 | 3.2389 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | hetalt | 79.4521 | 67.4419 | 96.6667 | 89.7959 | 29 | 14 | 29 | 1 | 1 | 100.0000 | |
| ckim-gatk | SNP | tv | map_l100_m2_e1 | homalt | 82.5549 | 70.3075 | 99.9694 | 70.5594 | 6540 | 2762 | 6540 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | * | 75.4506 | 61.8308 | 96.7658 | 90.3686 | 4100 | 2531 | 4099 | 137 | 8 | 5.8394 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | het | 78.5920 | 66.7348 | 95.5729 | 91.8237 | 2937 | 1464 | 2936 | 136 | 8 | 5.8824 | |
| ckim-gatk | SNP | tv | map_l125_m0_e0 | hetalt | 36.3636 | 22.2222 | 100.0000 | 97.9167 | 2 | 7 | 2 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m0_e0 | homalt | 68.6373 | 52.2738 | 99.9139 | 81.5935 | 1161 | 1060 | 1161 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m1_e0 | * | 83.4275 | 73.1269 | 97.1059 | 85.2195 | 11712 | 4304 | 11710 | 349 | 14 | 4.0115 | |
| ckim-gatk | SNP | tv | map_l125_m1_e0 | het | 87.4351 | 80.3377 | 95.9080 | 87.2955 | 8135 | 1991 | 8133 | 347 | 14 | 4.0346 | |
| ckim-gatk | SNP | tv | map_l125_m1_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 91.3462 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m1_e0 | homalt | 75.5546 | 60.7338 | 99.9438 | 75.6613 | 3559 | 2301 | 3559 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m2_e0 | * | 83.8704 | 73.7765 | 97.1641 | 86.1398 | 12165 | 4324 | 12163 | 355 | 14 | 3.9437 | |
| ckim-gatk | SNP | tv | map_l125_m2_e0 | het | 87.7913 | 80.8849 | 95.9873 | 88.0575 | 8446 | 1996 | 8444 | 353 | 14 | 3.9660 | |
| ckim-gatk | SNP | tv | map_l125_m2_e0 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e0 | homalt | 76.1523 | 61.5091 | 99.9460 | 77.4235 | 3701 | 2316 | 3701 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | * | 83.9775 | 73.9449 | 97.1598 | 86.1410 | 12317 | 4340 | 12315 | 360 | 15 | 4.1667 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | het | 87.8849 | 81.0480 | 95.9816 | 88.0637 | 8553 | 2000 | 8551 | 358 | 15 | 4.1899 | |
| ckim-gatk | SNP | tv | map_l125_m2_e1 | hetalt | 75.0000 | 60.0000 | 100.0000 | 92.8854 | 18 | 12 | 18 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l125_m2_e1 | homalt | 76.2777 | 61.6727 | 99.9466 | 77.3753 | 3746 | 2328 | 3746 | 2 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | * | 71.0339 | 56.1092 | 96.7755 | 93.2891 | 2342 | 1832 | 2341 | 78 | 7 | 8.9744 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | het | 74.0126 | 60.3588 | 95.6497 | 94.2325 | 1716 | 1127 | 1715 | 78 | 7 | 8.9744 | |
| ckim-gatk | SNP | tv | map_l150_m0_e0 | hetalt | 50.0000 | 33.3333 | 100.0000 | 98.7952 | 1 | 2 | 1 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m0_e0 | homalt | 64.0041 | 47.0633 | 100.0000 | 87.1795 | 625 | 703 | 625 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m1_e0 | * | 79.1583 | 66.8988 | 96.9190 | 88.8068 | 7300 | 3612 | 7298 | 232 | 8 | 3.4483 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | het | 83.3287 | 73.7979 | 95.6863 | 90.3850 | 5126 | 1820 | 5124 | 231 | 8 | 3.4632 | |
| ckim-gatk | SNP | tv | map_l150_m1_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 93.8202 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m1_e0 | homalt | 70.8020 | 54.8150 | 99.9538 | 81.0192 | 2163 | 1783 | 2163 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l150_m2_e0 | * | 79.8775 | 67.9260 | 96.9327 | 89.4279 | 7713 | 3642 | 7711 | 244 | 8 | 3.2787 | |
| ckim-gatk | SNP | tv | map_l150_m2_e0 | het | 83.9328 | 74.7380 | 95.7075 | 90.8782 | 5420 | 1832 | 5418 | 243 | 8 | 3.2922 | |
| ckim-gatk | SNP | tv | map_l150_m2_e0 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m2_e0 | homalt | 71.6934 | 55.8903 | 99.9562 | 82.4006 | 2282 | 1801 | 2282 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0038 | 68.1273 | 96.8955 | 89.4103 | 7836 | 3666 | 7834 | 251 | 9 | 3.5857 | |
| ckim-gatk | SNP | tv | map_l150_m2_e1 | het | 84.0437 | 74.9456 | 95.6560 | 90.8674 | 5507 | 1841 | 5505 | 250 | 9 | 3.6000 | |
| ckim-gatk | SNP | tv | map_l150_m2_e1 | hetalt | 70.9677 | 55.0000 | 100.0000 | 94.8357 | 11 | 9 | 11 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l150_m2_e1 | homalt | 71.8426 | 56.0716 | 99.9569 | 82.3233 | 2318 | 1816 | 2318 | 1 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l250_m0_e0 | * | 61.2245 | 45.0980 | 95.3039 | 98.2741 | 345 | 420 | 345 | 17 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l250_m0_e0 | het | 61.4118 | 45.6294 | 93.8849 | 98.4770 | 261 | 311 | 261 | 17 | 0 | 0.0000 | |
| ckim-gatk | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-gatk | SNP | tv | map_l250_m0_e0 | homalt | 60.6498 | 43.5233 | 100.0000 | 96.8563 | 84 | 109 | 84 | 0 | 0 | ||
| ckim-gatk | SNP | tv | map_l250_m1_e0 | * | 67.6636 | 52.1345 | 96.3687 | 96.3674 | 1380 | 1267 | 1380 | 52 | 1 | 1.9231 | |
| ckim-gatk | SNP | tv | map_l250_m1_e0 | het | 70.9926 | 56.6312 | 95.1128 | 96.8261 | 1012 | 775 | 1012 | 52 | 1 | 1.9231 | |