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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 350 351 352 353 354 355 356 357 358 ... 1720 1721 » 17651-17700 / 86044 show all
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	89.4737	2	0	2	0	0
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	99.4652	99.1471	99.7854	85.4602	465	4	465	1	1	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4448	99.3729	99.5169	82.8933	4120	26	4120	20	8	40.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2626	99.2439	99.2814	84.2685	2625	20	2625	19	7	36.8421
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	hetalt	100.0000	100.0000	100.0000	94.1176	3	0	3	0	0
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7660	99.5995	99.9330	79.6677	1492	6	1492	1	1	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8791	99.2863	98.4753	80.3955	14467	104	14467	224	14	6.2500
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.4418	99.2664	97.6308	83.1720	9066	67	9066	220	10	4.5455
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	hetalt	100.0000	100.0000	100.0000	94.2529	15	0	15	0	0
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6208	99.3177	99.9258	72.3505	5386	37	5386	4	4	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	*	99.7116	99.6705	99.7527	66.7352	4840	16	4840	12	10	83.3333
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6925	99.7409	99.6441	69.2652	3080	8	3080	11	9	81.8182
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	hetalt	100.0000	100.0000	100.0000	95.8333	1	0	1	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7448	99.5473	99.9432	60.9323	1759	8	1759	1	1	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	*	93.8776	88.4615	100.0000	97.0361	23	3	23	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	het	90.3226	82.3529	100.0000	97.5779	14	3	14	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_51to200	homalt	100.0000	100.0000	100.0000	95.4082	9	0	9	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7843	99.6517	99.9173	61.4911	10873	38	10869	9	5	55.5556
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8503	99.8005	99.9001	62.4759	7005	14	7001	7	3	42.8571
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	hetalt	100.0000	100.0000	100.0000	72.2222	5	0	5	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6646	99.3826	99.9483	59.5457	3863	24	3863	2	2	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	*		0.0000		100.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	het		0.0000		100.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	hetalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_gt10	homalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.8353	99.6779	98.0069	41.1938	7428	24	7425	151	1	0.6623
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	98.2863	99.7441	96.8705	43.6595	4677	12	4674	151	1	0.6623
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	hetalt	100.0000	100.0000	100.0000	66.6667	5	0	5	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7820	99.5649	100.0000	36.1989	2746	12	2746	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	*	96.3855	95.2381	97.5610	89.5939	40	2	40	1	0	0.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	het	95.7746	94.4444	97.1429	88.4488	34	2	34	1	0	0.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_51to200	homalt	100.0000	100.0000	100.0000	93.4066	6	0	6	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	*		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	het		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_gt200	homalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.7825	99.7971	99.7680	39.6992	3443	7	3440	8	2	25.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.8130	100.0000	99.6267	42.4234	2138	0	2135	8	2	25.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	hetalt		0.0000		100.0000	0	1	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7706	99.5423	100.0000	34.5537	1305	6	1305	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	*	100.0000	100.0000	100.0000	98.5714	1	0	1	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	het	100.0000	100.0000	100.0000	98.2456	1	0	1	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	hetalt		0.0000	0.0000	0.0000	0	0	0	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_51to200	homalt		0.0000		100.0000	0	0	0	0	0
ckim-gatk	SNP	tv	map_l100_m0_e0	*	81.7454	70.6424	96.9896	85.6470	7830	3254	7829	243	11	4.5268
ckim-gatk	SNP	tv	map_l100_m0_e0	het	84.8412	76.1423	95.7840	87.8860	5499	1723	5498	242	11	4.5455
ckim-gatk	SNP	tv	map_l100_m0_e0	hetalt	72.0000	56.2500	100.0000	92.1053	9	7	9	0	0
ckim-gatk	SNP	tv	map_l100_m0_e0	homalt	75.2796	60.3744	99.9570	73.4271	2322	1524	2322	1	0	0.0000

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