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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
17601-17650 / 86044 show all
ckim-gatkSNPtvfunc_cds*
99.5776
99.7941
99.3620
38.5208
436294361280
0.0000
ckim-gatkSNPtvfunc_cdshet
99.4192
99.8871
98.9556
44.4352
265432653280
0.0000
ckim-gatkSNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
61.5385
1001000
ckim-gatkSNPtvfunc_cdshomalt
99.8236
99.6479
100.0000
25.7867
16986169800
ckim-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1730
98.8786
99.4691
69.5432
149917149982
25.0000
ckim-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.7854
98.3871
99.1870
71.7404
9761697682
25.0000
ckim-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.9045
99.8092
100.0000
64.1781
523152300
ckim-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5094
99.6893
99.3302
65.3964
27592862758218618
9.6774
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3819
99.8008
98.9665
67.1777
17533351752318315
8.1967
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.0000
92.3077
100.0000
83.3333
1211200
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7369
99.5048
99.9701
61.6836
10047501004733
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8791
99.2863
98.4753
80.3955
144671041446722414
6.2500
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.4418
99.2664
97.6308
83.1720
906667906622010
4.5455
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
94.2529
1501500
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6208
99.3177
99.9258
72.3505
538637538644
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4749
99.2515
99.6992
51.2106
132610132640
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.1784
98.8304
99.5289
53.9837
8451084540
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
45.2787
481048100
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7702
99.8620
99.6786
64.4814
21713217170
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6761
99.8558
99.4971
65.7565
13852138570
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9363
99.8728
100.0000
61.9302
785178500
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7574
99.9306
99.5848
69.2619
14391143960
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.6728
100.0000
99.3478
70.2554
914091460
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9047
99.8095
100.0000
67.3317
524152400
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
96.9512
96.3636
97.5460
90.9595
159615942
50.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
96.3563
95.9677
96.7480
90.6535
119511942
50.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
98.7654
97.5610
100.0000
91.7355
4014000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.2254
99.0858
99.3653
88.4800
140913140998
88.8889
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.1238
99.1238
99.1238
89.4268
905890587
87.5000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
90.9091
20200
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2267
502550211
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4064
99.2885
99.5246
88.1335
12569125666
100.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3703
99.3703
99.3703
89.2862
789578955
100.0000