PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16301-16350 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | het | 96.2144 | 97.5096 | 94.9533 | 90.7487 | 509 | 13 | 508 | 27 | 2 | 7.4074 | |
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | hetalt | 76.9231 | 62.5000 | 100.0000 | 97.7974 | 5 | 3 | 5 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.7838 | 98.3871 | 99.1837 | 88.0020 | 244 | 4 | 243 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m0_e0 | * | 94.8454 | 100.0000 | 90.1961 | 97.3940 | 46 | 0 | 46 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m0_e0 | het | 92.9577 | 100.0000 | 86.8421 | 97.4132 | 33 | 0 | 33 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0252 | 13 | 0 | 13 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | * | 95.0825 | 96.4912 | 93.7143 | 95.4967 | 165 | 6 | 164 | 11 | 2 | 18.1818 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | het | 94.2847 | 97.2973 | 91.4530 | 95.8788 | 108 | 3 | 107 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.1308 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | homalt | 97.3451 | 96.4912 | 98.2143 | 94.0426 | 55 | 2 | 55 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | * | 95.4265 | 96.7391 | 94.1489 | 95.7629 | 178 | 6 | 177 | 11 | 2 | 18.1818 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | het | 94.7466 | 97.5207 | 92.1260 | 96.0730 | 118 | 3 | 117 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4496 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.5065 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | * | 95.4509 | 96.7568 | 94.1799 | 95.8498 | 179 | 6 | 178 | 11 | 2 | 18.1818 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | het | 94.7887 | 97.5410 | 92.1875 | 96.1481 | 119 | 3 | 118 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 80.0000 | 66.6667 | 100.0000 | 98.4962 | 2 | 1 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | homalt | 97.4790 | 96.6667 | 98.3051 | 94.6266 | 58 | 2 | 58 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | map_siren | * | 98.3320 | 98.6115 | 98.0541 | 82.6974 | 3480 | 49 | 3477 | 69 | 7 | 10.1449 | |
| ckim-dragen | INDEL | D1_5 | map_siren | het | 97.9286 | 98.6825 | 97.1861 | 82.8253 | 2247 | 30 | 2245 | 65 | 4 | 6.1539 | |
| ckim-dragen | INDEL | D1_5 | map_siren | hetalt | 96.2963 | 92.8571 | 100.0000 | 89.8570 | 78 | 6 | 78 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | map_siren | homalt | 99.2693 | 98.8870 | 99.6546 | 81.5458 | 1155 | 13 | 1154 | 4 | 3 | 75.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | * | 97.5135 | 99.6374 | 95.4783 | 95.4077 | 1099 | 4 | 1098 | 52 | 1 | 1.9231 | |
| ckim-dragen | INDEL | D1_5 | segdup | het | 96.2915 | 99.7110 | 93.0988 | 95.7597 | 690 | 2 | 688 | 51 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | hetalt | 98.0392 | 96.1538 | 100.0000 | 95.3039 | 50 | 2 | 51 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | segdup | homalt | 99.8609 | 100.0000 | 99.7222 | 94.4853 | 359 | 0 | 359 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9953 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9935 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D1_5 | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D1_5 | tech_badpromoters | * | 97.2973 | 94.7368 | 100.0000 | 43.7500 | 18 | 1 | 18 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | tech_badpromoters | het | 93.3333 | 87.5000 | 100.0000 | 46.1538 | 7 | 1 | 7 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | D1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 47.0588 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | * | * | 97.9198 | 97.6928 | 98.1478 | 56.3201 | 25490 | 602 | 25488 | 481 | 433 | 90.0208 | |
| ckim-dragen | INDEL | D6_15 | * | het | 99.2490 | 99.4651 | 99.0338 | 63.3339 | 11530 | 62 | 11480 | 112 | 67 | 59.8214 | |
| ckim-dragen | INDEL | D6_15 | * | hetalt | 96.4645 | 93.5894 | 99.5217 | 32.8589 | 7650 | 524 | 7699 | 37 | 37 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | * | homalt | 97.3161 | 99.7471 | 95.0008 | 59.2976 | 6310 | 16 | 6309 | 332 | 329 | 99.0964 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | * | 97.9831 | 97.6047 | 98.3644 | 58.6538 | 5175 | 127 | 5172 | 86 | 83 | 96.5116 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | het | 99.2569 | 98.9103 | 99.6060 | 59.0976 | 3086 | 34 | 3034 | 12 | 10 | 83.3333 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | hetalt | 93.7506 | 91.2142 | 96.4321 | 47.8822 | 924 | 89 | 973 | 36 | 36 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | HG002complexvar | homalt | 98.2293 | 99.6578 | 96.8412 | 63.9172 | 1165 | 4 | 1165 | 38 | 37 | 97.3684 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | * | 94.6830 | 94.0760 | 95.2979 | 36.3455 | 8496 | 535 | 8492 | 419 | 416 | 99.2840 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | het | 95.5765 | 97.8972 | 93.3633 | 64.0953 | 838 | 18 | 830 | 59 | 57 | 96.6102 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | hetalt | 96.5353 | 93.6572 | 99.5958 | 23.6915 | 7634 | 517 | 7638 | 31 | 31 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | HG002compoundhet | homalt | 12.7321 | 100.0000 | 6.7989 | 76.0353 | 24 | 0 | 24 | 329 | 328 | 99.6960 | |
| ckim-dragen | INDEL | D6_15 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9525 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | D6_15 | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.0654 | 1 | 0 | 1 | 0 | 0 | ||