PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
16051-16100 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e0 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 98.5915 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.1982 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e1 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | map_l250_m2_e1 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | map_siren | * | 96.0323 | 97.6744 | 94.4444 | 91.6589 | 84 | 2 | 85 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 91.9255 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_siren | hetalt | 96.7742 | 93.7500 | 100.0000 | 86.9919 | 15 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | map_siren | homalt | 97.6744 | 100.0000 | 95.4545 | 92.9487 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | segdup | * | 100.0000 | 100.0000 | 100.0000 | 96.6284 | 47 | 0 | 47 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdup | het | 100.0000 | 100.0000 | 100.0000 | 97.2540 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdup | homalt | 100.0000 | 100.0000 | 100.0000 | 94.8370 | 19 | 0 | 19 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 73.3333 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | tech_badpromoters | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | * | * | 99.2774 | 99.1830 | 99.3720 | 58.7161 | 149433 | 1231 | 149372 | 944 | 540 | 57.2034 | |
| ckim-dragen | INDEL | I1_5 | * | het | 99.4703 | 99.6091 | 99.3319 | 60.8221 | 78732 | 309 | 78650 | 529 | 129 | 24.3856 | |
| ckim-dragen | INDEL | I1_5 | * | hetalt | 96.2953 | 92.8718 | 99.9809 | 60.6438 | 10397 | 798 | 10451 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | * | homalt | 99.5565 | 99.7948 | 99.3194 | 55.1956 | 60304 | 124 | 60271 | 413 | 409 | 99.0315 | |
| ckim-dragen | INDEL | I1_5 | HG002complexvar | * | 99.5809 | 99.4065 | 99.7559 | 56.6825 | 33165 | 198 | 33105 | 81 | 67 | 82.7160 | |
| ckim-dragen | INDEL | I1_5 | HG002complexvar | het | 99.6858 | 99.5712 | 99.8007 | 57.6433 | 18111 | 78 | 18030 | 36 | 22 | 61.1111 | |
| ckim-dragen | INDEL | I1_5 | HG002complexvar | hetalt | 97.1421 | 94.4959 | 99.9407 | 69.6380 | 1631 | 95 | 1685 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | HG002complexvar | homalt | 99.7432 | 99.8141 | 99.6725 | 52.7072 | 13423 | 25 | 13390 | 44 | 44 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | HG002compoundhet | * | 94.8982 | 93.4283 | 96.4151 | 65.5477 | 11544 | 812 | 11538 | 429 | 425 | 99.0676 | |
| ckim-dragen | INDEL | I1_5 | HG002compoundhet | het | 97.0139 | 98.3529 | 95.7108 | 85.3685 | 836 | 14 | 781 | 35 | 32 | 91.4286 | |
| ckim-dragen | INDEL | I1_5 | HG002compoundhet | hetalt | 96.3036 | 92.8872 | 99.9808 | 55.1746 | 10382 | 795 | 10432 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | HG002compoundhet | homalt | 62.2015 | 99.0881 | 45.3278 | 87.8082 | 326 | 3 | 325 | 392 | 391 | 99.7449 | |
| ckim-dragen | INDEL | I1_5 | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | decoy | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | decoy | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | decoy | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | func_cds | * | 98.6301 | 100.0000 | 97.2973 | 39.7394 | 180 | 0 | 180 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | func_cds | het | 95.9350 | 100.0000 | 92.1875 | 52.9412 | 59 | 0 | 59 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.1667 | 119 | 0 | 119 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1429 | 90.3366 | 98.2840 | 67.1270 | 1664 | 178 | 1661 | 29 | 28 | 96.5517 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.3608 | 96.0725 | 98.6842 | 78.4703 | 636 | 26 | 600 | 8 | 7 | 87.5000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 91.2068 | 83.8350 | 100.0000 | 41.5864 | 752 | 145 | 788 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.1346 | 97.5265 | 92.8571 | 69.6281 | 276 | 7 | 273 | 21 | 21 | 100.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.8624 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7742 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.6173 | 97.7724 | 99.4771 | 72.6068 | 15230 | 347 | 15218 | 80 | 60 | 75.0000 | |