PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15901-15950 / 86044 show all
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.7859
99.8680
99.7039
39.7224
181592418186546
11.1111
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50het
99.6905
99.8338
99.5476
42.3216
114141911441524
7.6923
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
50500
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9259
99.9703
34.6642
67405674022
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_51to200*
95.4254
93.0070
97.9730
92.5963
1331014530
0.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_51to200het
94.5164
92.1569
97.0000
93.1741
9489730
0.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_51to200homalt
97.5000
95.1220
100.0000
91.0112
3924800
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7896
99.8368
99.7424
34.4616
7343127358198
42.1053
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50het
99.7626
99.9133
99.6124
36.8335
461244626187
38.8889
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.8538
99.7443
99.9634
29.9590
27317273211
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
94.7368
90900
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.6970
70700
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
ckim-dragenSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
100.0000
100.0000
100.0000
94.8718
20200
ckim-dragenSNP*map_l100_m0_e0*
98.2840
98.9495
97.6275
70.9502
324963453250879091
11.5190
ckim-dragenSNP*map_l100_m0_e0het
97.6312
98.8022
96.4876
75.1408
209512542096076367
8.7811
ckim-dragenSNP*map_l100_m0_e0hetalt
100.0000
100.0000
100.0000
79.4872
1601600
ckim-dragenSNP*map_l100_m0_e0homalt
99.4909
99.2169
99.7664
57.4442
1152991115322724
88.8889
ckim-dragenSNP*map_l100_m1_e0*
98.6742
99.2901
98.0660
67.7530
71889514719001418151
10.6488
ckim-dragenSNP*map_l100_m1_e0het
98.1047
99.2152
97.0189
72.1356
45003356450091383119
8.6045
ckim-dragenSNP*map_l100_m1_e0hetalt
98.7654
97.5610
100.0000
78.7234
4014000
ckim-dragenSNP*map_l100_m1_e0homalt
99.6437
99.4186
99.8698
55.6951
26846157268513532
91.4286
ckim-dragenSNP*map_l100_m2_e0*
98.6634
99.2943
98.0406
69.7855
73442522734531468152
10.3542
ckim-dragenSNP*map_l100_m2_e0het
98.0933
99.2263
96.9859
73.8971
46040359460461431119
8.3159
ckim-dragenSNP*map_l100_m2_e0hetalt
98.7952
97.6190
100.0000
81.1927
4114100
ckim-dragenSNP*map_l100_m2_e0homalt
99.6377
99.4114
99.8650
58.3933
27361162273663733
89.1892
ckim-dragenSNP*map_l100_m2_e1*
98.6686
99.2949
98.0501
69.8284
74210527742211476153
10.3659
ckim-dragenSNP*map_l100_m2_e1het
98.1019
99.2281
97.0009
73.9476
46536362465421439120
8.3391
ckim-dragenSNP*map_l100_m2_e1hetalt
98.8235
97.6744
100.0000
80.8219
4214200
ckim-dragenSNP*map_l100_m2_e1homalt
99.6376
99.4100
99.8663
58.3837
27632164276373733
89.1892
ckim-dragenSNP*map_l125_m0_e0*
98.0759
98.7207
97.4394
76.5498
191372481914150356
11.1332
ckim-dragenSNP*map_l125_m0_e0het
97.3570
98.4523
96.2857
80.0772
124681961246948137
7.6923
ckim-dragenSNP*map_l125_m0_e0hetalt
100.0000
100.0000
100.0000
85.9375
90900
ckim-dragenSNP*map_l125_m0_e0homalt
99.4476
99.2253
99.6709
64.2590
66605266632219
86.3636
ckim-dragenSNP*map_l125_m1_e0*
98.3997
99.0866
97.7222
72.8507
44913414449191047117
11.1748
ckim-dragenSNP*map_l125_m1_e0het
97.7148
98.9469
96.5131
76.8910
2809329928094101588
8.6700
ckim-dragenSNP*map_l125_m1_e0hetalt
98.3051
96.6667
100.0000
80.2721
2912900
ckim-dragenSNP*map_l125_m1_e0homalt
99.5672
99.3256
99.8098
61.0436
16791114167963229
90.6250
ckim-dragenSNP*map_l125_m2_e0*
98.4092
99.0947
97.7332
74.8209
46300423463061074120
11.1732
ckim-dragenSNP*map_l125_m2_e0het
97.7348
98.9665
96.5334
78.5462
2901530329016104291
8.7332
ckim-dragenSNP*map_l125_m2_e0hetalt
98.3051
96.6667
100.0000
83.0409
2912900
ckim-dragenSNP*map_l125_m2_e0homalt
99.5644
99.3151
99.8150
63.8939
17256119172613229
90.6250
ckim-dragenSNP*map_l125_m2_e1*
98.4159
99.0996
97.7415
74.8940
46777425467831081120
11.1008
ckim-dragenSNP*map_l125_m2_e1het
97.7443
98.9710
96.5476
78.6185
2933530529336104991
8.6749
ckim-dragenSNP*map_l125_m2_e1hetalt
98.3051
96.6667
100.0000
83.0409
2912900
ckim-dragenSNP*map_l125_m2_e1homalt
99.5683
99.3212
99.8166
63.9224
17413119174183229
90.6250