PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15301-15350 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2584 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7253 | 99.7681 | 99.6824 | 38.1649 | 3442 | 8 | 3453 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6745 | 99.8597 | 99.4900 | 40.5130 | 2135 | 3 | 2146 | 11 | 4 | 36.3636 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8472 | 99.6949 | 100.0000 | 33.7893 | 1307 | 4 | 1307 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.6111 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ckim-dragen | SNP | tv | map_l100_m0_e0 | * | 98.2217 | 98.8903 | 97.5621 | 72.7546 | 10961 | 123 | 10965 | 274 | 31 | 11.3139 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | het | 97.5576 | 98.6846 | 96.4561 | 76.6502 | 7127 | 95 | 7131 | 262 | 21 | 8.0153 | |
| ckim-dragen | SNP | tv | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4872 | 16 | 0 | 16 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l100_m0_e0 | homalt | 99.4789 | 99.2720 | 99.6867 | 59.7308 | 3818 | 28 | 3818 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | * | 98.6576 | 99.2817 | 98.0414 | 69.3325 | 24325 | 176 | 24328 | 486 | 45 | 9.2593 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | het | 98.0692 | 99.1503 | 97.0114 | 73.5010 | 15286 | 131 | 15289 | 471 | 32 | 6.7941 | |
| ckim-dragen | SNP | tv | map_l100_m1_e0 | hetalt | 98.7654 | 97.5610 | 100.0000 | 78.7234 | 40 | 1 | 40 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l100_m1_e0 | homalt | 99.6733 | 99.5134 | 99.8336 | 57.5832 | 8999 | 44 | 8999 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l100_m2_e0 | * | 98.6448 | 99.2929 | 98.0051 | 71.3118 | 24856 | 177 | 24859 | 506 | 45 | 8.8933 | |
| ckim-dragen | SNP | tv | map_l100_m2_e0 | het | 98.0513 | 99.1697 | 96.9579 | 75.2085 | 15646 | 131 | 15649 | 491 | 32 | 6.5173 | |
| ckim-dragen | SNP | tv | map_l100_m2_e0 | hetalt | 98.7952 | 97.6190 | 100.0000 | 81.1927 | 41 | 1 | 41 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l100_m2_e0 | homalt | 99.6739 | 99.5116 | 99.8367 | 60.2338 | 9169 | 45 | 9169 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | * | 98.6522 | 99.2920 | 98.0206 | 71.3656 | 25104 | 179 | 25107 | 507 | 45 | 8.8757 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | het | 98.0614 | 99.1655 | 96.9816 | 75.2723 | 15805 | 133 | 15808 | 492 | 32 | 6.5041 | |
| ckim-dragen | SNP | tv | map_l100_m2_e1 | hetalt | 98.8235 | 97.6744 | 100.0000 | 80.8219 | 42 | 1 | 42 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l100_m2_e1 | homalt | 99.6770 | 99.5162 | 99.8382 | 60.2316 | 9257 | 45 | 9257 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | * | 97.9625 | 98.6126 | 97.3210 | 77.9914 | 6539 | 92 | 6539 | 180 | 17 | 9.4444 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | het | 97.2122 | 98.2504 | 96.1958 | 81.1222 | 4324 | 77 | 4324 | 171 | 10 | 5.8480 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.9375 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l125_m0_e0 | homalt | 99.4590 | 99.3246 | 99.5937 | 66.7118 | 2206 | 15 | 2206 | 9 | 7 | 77.7778 | |
| ckim-dragen | SNP | tv | map_l125_m1_e0 | * | 98.3749 | 99.0322 | 97.7263 | 73.5955 | 15861 | 155 | 15860 | 369 | 38 | 10.2981 | |
| ckim-dragen | SNP | tv | map_l125_m1_e0 | het | 97.6861 | 98.8149 | 96.5827 | 77.3870 | 10006 | 120 | 10005 | 354 | 25 | 7.0622 | |
| ckim-dragen | SNP | tv | map_l125_m1_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 80.2721 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l125_m1_e0 | homalt | 99.5812 | 99.4198 | 99.7432 | 62.3307 | 5826 | 34 | 5826 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | * | 98.4063 | 99.0539 | 97.7671 | 75.5410 | 16333 | 156 | 16332 | 373 | 39 | 10.4558 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | het | 97.7368 | 98.8508 | 96.6476 | 79.0398 | 10322 | 120 | 10321 | 358 | 26 | 7.2626 | |
| ckim-dragen | SNP | tv | map_l125_m2_e0 | hetalt | 98.3051 | 96.6667 | 100.0000 | 83.0409 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l125_m2_e0 | homalt | 99.5838 | 99.4183 | 99.7499 | 65.0891 | 5982 | 35 | 5982 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | * | 98.4134 | 99.0575 | 97.7776 | 75.6170 | 16500 | 157 | 16499 | 375 | 39 | 10.4000 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | het | 97.7464 | 98.8534 | 96.6639 | 79.1212 | 10432 | 121 | 10431 | 360 | 26 | 7.2222 | |
| ckim-dragen | SNP | tv | map_l125_m2_e1 | hetalt | 98.3051 | 96.6667 | 100.0000 | 83.0409 | 29 | 1 | 29 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l125_m2_e1 | homalt | 99.5877 | 99.4238 | 99.7522 | 65.1046 | 6039 | 35 | 6039 | 15 | 13 | 86.6667 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | * | 97.7354 | 98.2271 | 97.2486 | 82.2976 | 4100 | 74 | 4100 | 116 | 14 | 12.0690 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | het | 97.0162 | 97.7840 | 96.2604 | 84.6993 | 2780 | 63 | 2780 | 108 | 8 | 7.4074 | |
| ckim-dragen | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.5455 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m0_e0 | homalt | 99.2838 | 99.1717 | 99.3962 | 72.8817 | 1317 | 11 | 1317 | 8 | 6 | 75.0000 | |
| ckim-dragen | SNP | tv | map_l150_m1_e0 | * | 98.2065 | 98.8636 | 97.5581 | 77.3404 | 10788 | 124 | 10787 | 270 | 27 | 10.0000 | |
| ckim-dragen | SNP | tv | map_l150_m1_e0 | het | 97.4517 | 98.5603 | 96.3677 | 80.7125 | 6846 | 100 | 6845 | 258 | 17 | 6.5892 | |
| ckim-dragen | SNP | tv | map_l150_m1_e0 | hetalt | 97.4359 | 95.0000 | 100.0000 | 84.6774 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | SNP | tv | map_l150_m1_e0 | homalt | 99.5559 | 99.4171 | 99.6950 | 66.7792 | 3923 | 23 | 3923 | 12 | 10 | 83.3333 | |
| ckim-dragen | SNP | tv | map_l150_m2_e0 | * | 98.2503 | 98.9080 | 97.6013 | 79.0121 | 11231 | 124 | 11230 | 276 | 27 | 9.7826 | |