PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15051-15100 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | map_l250_m2_e0 | hetalt | 60.0000 | 60.0000 | 60.0000 | 83.3333 | 3 | 2 | 3 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | homalt | 82.1383 | 80.2173 | 84.1537 | 87.5709 | 1403 | 346 | 1402 | 264 | 189 | 71.5909 | |
| ckim-dragen | INDEL | * | * | * | 99.1359 | 99.1574 | 99.1143 | 60.3466 | 341639 | 2903 | 341303 | 3050 | 2010 | 65.9016 | |
| ckim-dragen | INDEL | * | * | het | 99.4503 | 99.5962 | 99.3048 | 61.2221 | 193349 | 784 | 192841 | 1350 | 335 | 24.8148 | |
| ckim-dragen | INDEL | * | * | hetalt | 95.9597 | 92.4793 | 99.7124 | 57.0557 | 23339 | 1898 | 23575 | 68 | 68 | 100.0000 | |
| ckim-dragen | INDEL | * | * | homalt | 99.2636 | 99.8234 | 98.7101 | 59.5235 | 124951 | 221 | 124887 | 1632 | 1607 | 98.4681 | |
| ckim-dragen | INDEL | * | HG002complexvar | * | 99.3944 | 99.2565 | 99.5327 | 58.0987 | 76366 | 572 | 76037 | 357 | 301 | 84.3137 | |
| ckim-dragen | INDEL | * | HG002complexvar | het | 99.6184 | 99.4569 | 99.7805 | 57.4574 | 45961 | 251 | 45458 | 100 | 50 | 50.0000 | |
| ckim-dragen | INDEL | * | HG002complexvar | hetalt | 95.4523 | 92.7548 | 98.3114 | 67.8279 | 3431 | 268 | 3668 | 63 | 63 | 100.0000 | |
| ckim-dragen | INDEL | * | HG002complexvar | homalt | 99.5434 | 99.8039 | 99.2843 | 57.4048 | 26974 | 53 | 26911 | 194 | 188 | 96.9072 | |
| ckim-dragen | INDEL | * | HG002compoundhet | * | 93.6532 | 93.4379 | 93.8696 | 62.4863 | 27994 | 1966 | 27868 | 1820 | 1806 | 99.2308 | |
| ckim-dragen | INDEL | * | HG002compoundhet | het | 96.6766 | 98.1925 | 95.2069 | 77.0708 | 4020 | 74 | 3774 | 190 | 179 | 94.2105 | |
| ckim-dragen | INDEL | * | HG002compoundhet | hetalt | 96.0007 | 92.5060 | 99.7699 | 50.0702 | 23293 | 1887 | 23417 | 54 | 54 | 100.0000 | |
| ckim-dragen | INDEL | * | HG002compoundhet | homalt | 46.1333 | 99.2711 | 30.0488 | 84.8211 | 681 | 5 | 677 | 1576 | 1573 | 99.8096 | |
| ckim-dragen | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9687 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9776 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8478 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9339 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | func_cds | * | 98.4444 | 99.5506 | 97.3626 | 49.5006 | 443 | 2 | 443 | 12 | 1 | 8.3333 | |
| ckim-dragen | INDEL | * | func_cds | het | 97.2603 | 99.5327 | 95.0893 | 57.2519 | 213 | 1 | 213 | 11 | 0 | 0.0000 | |
| ckim-dragen | INDEL | * | func_cds | hetalt | 88.8889 | 80.0000 | 100.0000 | 63.6364 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 37.9781 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.1784 | 93.5471 | 94.8182 | 69.0265 | 9423 | 650 | 9259 | 506 | 472 | 93.2806 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.7279 | 96.7327 | 96.7231 | 79.7872 | 3908 | 132 | 3601 | 122 | 95 | 77.8689 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.8661 | 87.0293 | 99.5422 | 40.0515 | 3328 | 496 | 3479 | 16 | 16 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 91.7876 | 99.0041 | 85.5516 | 65.0041 | 2187 | 22 | 2179 | 368 | 361 | 98.0978 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.4359 | 95.0000 | 100.0000 | 99.4237 | 19 | 1 | 19 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4513 | 12 | 0 | 12 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3855 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 88.8889 | 80.0000 | 100.0000 | 99.6105 | 4 | 1 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.9722 | 98.8576 | 99.0871 | 73.7310 | 93370 | 1079 | 93240 | 859 | 756 | 88.0093 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.5191 | 99.4821 | 99.5562 | 75.3624 | 48021 | 250 | 47785 | 213 | 116 | 54.4601 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.2357 | 94.9731 | 99.6087 | 58.9389 | 14642 | 775 | 14763 | 58 | 58 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 98.9650 | 99.8245 | 98.1202 | 75.4285 | 30707 | 54 | 30692 | 588 | 582 | 98.9796 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.8701 | 97.6006 | 98.1411 | 68.2416 | 63783 | 1568 | 63513 | 1203 | 1069 | 88.8612 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.8570 | 98.7533 | 98.9610 | 74.4420 | 30100 | 380 | 29622 | 311 | 194 | 62.3794 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4289 | 93.4391 | 99.6164 | 40.1880 | 15609 | 1096 | 15843 | 61 | 61 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 97.5070 | 99.4936 | 95.5983 | 68.5706 | 18074 | 92 | 18048 | 831 | 814 | 97.9543 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.7158 | 97.4490 | 97.9841 | 76.9231 | 2101 | 55 | 2090 | 43 | 21 | 48.8372 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9211 | 97.8503 | 97.9920 | 79.1387 | 1229 | 27 | 1220 | 25 | 7 | 28.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 93.2907 | 87.4251 | 100.0000 | 68.5535 | 146 | 21 | 150 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2974 | 99.0450 | 97.5610 | 73.6240 | 726 | 7 | 720 | 18 | 14 | 77.7778 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 96.9697 | 94.1176 | 100.0000 | 99.4940 | 16 | 1 | 16 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.5206 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.0000 | 3 | 0 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 85.7143 | 75.0000 | 100.0000 | 99.7003 | 3 | 1 | 3 | 0 | 0 | ||
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5015 | 99.5702 | 99.4329 | 75.1639 | 5097 | 22 | 5085 | 29 | 11 | 37.9310 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5329 | 99.6333 | 99.4326 | 76.3741 | 2989 | 11 | 2979 | 17 | 2 | 11.7647 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0439 | 96.5665 | 99.5671 | 75.8368 | 225 | 8 | 230 | 1 | 1 | 100.0000 | |
| ckim-dragen | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6285 | 99.8409 | 99.4171 | 72.8645 | 1883 | 3 | 1876 | 11 | 8 | 72.7273 | |