PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
15001-15050 / 86044 show all | |||||||||||||||
| ciseli-custom | SNP | ti | map_l100_m2_e0 | * | 86.2627 | 83.2663 | 89.4829 | 71.0430 | 40768 | 8193 | 40704 | 4784 | 1327 | 27.7383 | |
| ciseli-custom | SNP | ti | map_l100_m2_e0 | het | 83.2254 | 78.7865 | 88.1944 | 75.0570 | 24126 | 6496 | 24100 | 3226 | 86 | 2.6658 | |
| ciseli-custom | SNP | ti | map_l100_m2_e0 | hetalt | 76.3636 | 70.0000 | 84.0000 | 72.2222 | 21 | 9 | 21 | 4 | 4 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l100_m2_e0 | homalt | 91.1050 | 90.7805 | 91.4319 | 61.7718 | 16621 | 1688 | 16583 | 1554 | 1237 | 79.6010 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | * | 86.3257 | 83.3424 | 89.5306 | 71.0284 | 41242 | 8243 | 41176 | 4815 | 1336 | 27.7466 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | het | 83.3126 | 78.8921 | 88.2578 | 75.0429 | 24425 | 6535 | 24398 | 3246 | 86 | 2.6494 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | hetalt | 75.8621 | 70.9677 | 81.4815 | 70.9677 | 22 | 9 | 22 | 5 | 5 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | homalt | 91.1369 | 90.8132 | 91.4629 | 61.7425 | 16795 | 1699 | 16756 | 1564 | 1245 | 79.6036 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | * | 78.8823 | 74.4554 | 83.8690 | 80.0753 | 9502 | 3260 | 9499 | 1827 | 513 | 28.0788 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | het | 74.4671 | 68.2803 | 81.8868 | 84.0446 | 5642 | 2621 | 5642 | 1248 | 40 | 3.2051 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | hetalt | 61.5385 | 50.0000 | 80.0000 | 82.1429 | 4 | 4 | 4 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m0_e0 | homalt | 86.4046 | 85.8606 | 86.9555 | 67.4980 | 3856 | 635 | 3853 | 578 | 472 | 81.6609 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | * | 81.8023 | 77.7842 | 86.2580 | 75.7269 | 22818 | 6517 | 22798 | 3632 | 966 | 26.5969 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | het | 77.4977 | 72.0300 | 83.8636 | 79.8833 | 13157 | 5109 | 13154 | 2531 | 72 | 2.8447 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 67.2414 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m1_e0 | homalt | 88.5271 | 87.3246 | 89.7632 | 65.2408 | 9645 | 1400 | 9628 | 1098 | 891 | 81.1475 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | * | 82.0578 | 78.1149 | 86.4200 | 77.2839 | 23636 | 6622 | 23616 | 3711 | 984 | 26.5158 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | het | 77.8322 | 72.4359 | 84.0972 | 81.0572 | 13673 | 5203 | 13670 | 2585 | 72 | 2.7853 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | hetalt | 74.4186 | 66.6667 | 84.2105 | 73.6111 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e0 | homalt | 88.6940 | 87.5770 | 89.8399 | 67.8832 | 9947 | 1411 | 9930 | 1123 | 909 | 80.9439 | |
| ciseli-custom | SNP | ti | map_l125_m2_e1 | * | 82.1337 | 78.2100 | 86.4719 | 77.2907 | 23908 | 6661 | 23887 | 3737 | 990 | 26.4918 | |
| ciseli-custom | SNP | ti | map_l125_m2_e1 | het | 77.9434 | 72.5730 | 84.1721 | 81.0539 | 13852 | 5235 | 13848 | 2604 | 72 | 2.7650 | |
| ciseli-custom | SNP | ti | map_l125_m2_e1 | hetalt | 74.4186 | 66.6667 | 84.2105 | 73.9726 | 16 | 8 | 16 | 3 | 3 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l125_m2_e1 | homalt | 88.7321 | 87.6244 | 89.8682 | 67.8893 | 10040 | 1418 | 10023 | 1130 | 915 | 80.9735 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | * | 76.8096 | 72.5099 | 81.6514 | 84.8420 | 5700 | 2161 | 5696 | 1280 | 329 | 25.7031 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | het | 72.0997 | 66.3920 | 78.8811 | 87.9805 | 3384 | 1713 | 3384 | 906 | 29 | 3.2009 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | hetalt | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 1 | 2 | 1 | 1 | 1 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m0_e0 | homalt | 84.9597 | 83.8464 | 86.1028 | 73.9645 | 2315 | 446 | 2311 | 373 | 299 | 80.1609 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | * | 78.8472 | 74.5840 | 83.6274 | 80.0382 | 14702 | 5010 | 14695 | 2877 | 739 | 25.6865 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | het | 73.8384 | 68.2296 | 80.4520 | 83.6682 | 8440 | 3930 | 8437 | 2050 | 62 | 3.0244 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 73.3333 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m1_e0 | homalt | 86.8060 | 85.3282 | 88.3359 | 70.2453 | 6252 | 1075 | 6248 | 825 | 675 | 81.8182 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | * | 79.2695 | 75.0926 | 83.9385 | 81.3448 | 15403 | 5109 | 15396 | 2946 | 753 | 25.5601 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | het | 74.3678 | 68.8533 | 80.8425 | 84.6368 | 8869 | 4012 | 8866 | 2101 | 62 | 2.9510 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | hetalt | 74.0741 | 66.6667 | 83.3333 | 76.9231 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e0 | homalt | 87.0824 | 85.6618 | 88.5509 | 72.6120 | 6524 | 1092 | 6520 | 843 | 689 | 81.7319 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | * | 79.2822 | 75.1146 | 83.9394 | 81.3843 | 15566 | 5157 | 15559 | 2977 | 763 | 25.6298 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | het | 74.4004 | 68.8974 | 80.8587 | 84.6760 | 8967 | 4048 | 8964 | 2122 | 62 | 2.9218 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | hetalt | 74.0741 | 66.6667 | 83.3333 | 77.3585 | 10 | 5 | 10 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l150_m2_e1 | homalt | 87.0667 | 85.6493 | 88.5319 | 72.6293 | 6589 | 1104 | 6585 | 853 | 699 | 81.9461 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | * | 69.6954 | 66.4234 | 73.3065 | 95.3499 | 910 | 460 | 909 | 331 | 59 | 17.8248 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | het | 64.5750 | 60.5996 | 69.1087 | 96.2053 | 566 | 368 | 566 | 253 | 6 | 2.3715 | |
| ciseli-custom | SNP | ti | map_l250_m0_e0 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | SNP | ti | map_l250_m0_e0 | homalt | 80.1652 | 78.8991 | 81.4727 | 91.7012 | 344 | 92 | 343 | 78 | 53 | 67.9487 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | * | 70.0357 | 66.4337 | 74.0506 | 91.7565 | 3042 | 1537 | 3042 | 1066 | 196 | 18.3865 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | het | 63.3134 | 59.0633 | 68.2225 | 93.3005 | 1753 | 1215 | 1754 | 817 | 20 | 2.4480 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | hetalt | 50.0000 | 50.0000 | 50.0000 | 82.6087 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| ciseli-custom | SNP | ti | map_l250_m1_e0 | homalt | 81.9434 | 80.0871 | 83.8878 | 86.5926 | 1287 | 320 | 1286 | 247 | 174 | 70.4453 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | * | 70.7049 | 66.8930 | 74.9776 | 92.1064 | 3350 | 1658 | 3350 | 1118 | 211 | 18.8730 | |
| ciseli-custom | SNP | ti | map_l250_m2_e0 | het | 64.2691 | 59.7419 | 69.5388 | 93.5208 | 1944 | 1310 | 1945 | 852 | 20 | 2.3474 | |