PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
13751-13800 / 86044 show all
ciseli-customSNPtimap_l250_m2_e1hetalt
60.0000
60.0000
60.0000
83.8710
32322
100.0000
ciseli-customSNPtimap_l250_m2_e1homalt
82.2049
80.4740
84.0118
87.5404
14263461424271196
72.3247
ciseli-customSNPtimap_siren*
90.7989
89.0429
92.6255
57.4504
89359109968907770922003
28.2431
ciseli-customSNPtimap_sirenhet
88.8574
85.8902
92.0370
60.6835
535808802534684626118
2.5508
ciseli-customSNPtimap_sirenhetalt
81.1321
75.4386
87.7551
63.1579
43144366
100.0000
ciseli-customSNPtimap_sirenhomalt
93.8892
94.2504
93.5307
51.3255
3573621803556624601879
76.3821
ciseli-customSNPtisegdup*
97.2840
98.8381
95.7779
90.5362
1931022719237848118
13.9151
ciseli-customSNPtisegduphet
96.4948
98.3957
94.6659
91.6122
118371931180266519
2.8571
ciseli-customSNPtisegduphetalt
80.0000
100.0000
66.6667
96.5909
20210
0.0000
ciseli-customSNPtisegduphomalt
98.5690
99.5470
97.6100
88.0096
747134743318299
54.3956
ciseli-customSNPtisegdupwithalt*
0.0000
100.0000
00000
ciseli-customSNPtisegdupwithalthet
0.0000
100.0000
00000
ciseli-customSNPtisegdupwithalthetalt
0.0000
100.0000
00000
ciseli-customSNPtisegdupwithalthomalt
0.0000
100.0000
00000
ciseli-customSNPtitech_badpromoters*
86.2240
92.9412
80.4124
43.9306
79678191
5.2632
ciseli-customSNPtitech_badpromotershet
79.2079
90.9091
70.1754
39.3617
40440170
0.0000
ciseli-customSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ciseli-customSNPtitech_badpromotershomalt
95.0609
95.1220
95.0000
49.3671
3923821
50.0000
ciseli-customSNPtv**
96.5740
98.6920
94.5451
25.2127
95701412684954909550954019
7.2947
ciseli-customSNPtv*het
95.4085
98.2395
92.7361
26.7935
5812871041758058345476409
0.8994
ciseli-customSNPtv*hetalt
87.9067
82.2044
94.4591
39.6977
7161557164219
45.2381
ciseli-customSNPtv*homalt
98.4608
99.4400
97.5007
22.4395
375011211237361095773591
37.4961
ciseli-customSNPtvHG002complexvar*
94.9824
96.7736
93.2564
24.4003
2382137942236085170722875
16.8404
ciseli-customSNPtvHG002complexvarhet
94.7007
95.5637
93.8531
24.0959
14404766871433239387273
2.9083
ciseli-customSNPtvHG002complexvarhetalt
70.4724
57.7419
90.4040
39.8176
179131179199
47.3684
ciseli-customSNPtvHG002complexvarhomalt
95.4763
98.8182
92.3530
24.8215
9398711249258376662593
33.8247
ciseli-customSNPtvHG002compoundhet*
66.9226
84.5568
55.3744
51.6390
7545137875736103515
8.4385
ciseli-customSNPtvHG002compoundhethet
56.8474
77.9585
44.7336
53.7648
364310303678454489
1.9586
ciseli-customSNPtvHG002compoundhethetalt
90.1141
82.4826
99.3017
17.9840
71115171152
40.0000
ciseli-customSNPtvHG002compoundhethomalt
78.4375
94.1854
67.2014
50.7638
319119731841554424
27.2844
ciseli-customSNPtvdecoy*
0.0000
100.0000
00000
ciseli-customSNPtvdecoyhet
0.0000
100.0000
00000
ciseli-customSNPtvdecoyhetalt
0.0000
100.0000
00000
ciseli-customSNPtvdecoyhomalt
0.0000
100.0000
00000
ciseli-customSNPtvfunc_cds*
95.2555
99.4738
91.3804
30.2616
434823433640911
2.6895
ciseli-customSNPtvfunc_cdshet
92.8964
99.2473
87.3095
32.0576
26372026353832
0.5222
ciseli-customSNPtvfunc_cdshetalt
94.7368
90.0000
100.0000
35.7143
91900
ciseli-customSNPtvfunc_cdshomalt
99.1797
99.8826
98.4866
26.8313
170221692269
34.6154
ciseli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
70.5551
95.3826
55.9831
73.4742
1446701455114427
2.3601
ciseli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
63.5187
93.8508
48.0041
71.9172
9316193810168
0.7874
ciseli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
87.5000
00020
0.0000
ciseli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
88.4490
98.2824
80.4044
77.2309
515951712619
15.0794
ciseli-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
89.4833
97.3914
82.7630
66.8151
26956722270135626378
6.7188
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
86.4138
96.3627
78.3270
66.2442
1692963917004470598
2.0829
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
55.5556
76.9231
43.4783
70.8861
10310133
23.0769
ciseli-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
95.2928
99.2077
91.6751
67.8866
10017809999908277
30.5066