PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
13451-13500 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 3.7955 | 0.0000 | 0.0000 | 49 | 1242 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 48.6065 | 77.8364 | 35.3365 | 53.6490 | 295 | 84 | 294 | 538 | 460 | 85.5019 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 99.1525 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.5000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 56.8616 | 54.1076 | 59.9109 | 50.1524 | 11144 | 9452 | 11168 | 7473 | 5485 | 73.3976 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 75.2916 | 86.8093 | 66.4721 | 57.3739 | 6410 | 974 | 6834 | 3447 | 1755 | 50.9138 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 4.6943 | 0.0000 | 0.0000 | 380 | 7715 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 64.4294 | 85.0889 | 51.8421 | 37.0340 | 4354 | 763 | 4334 | 4026 | 3730 | 92.6478 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 59.0651 | 56.3393 | 62.0679 | 49.1269 | 10287 | 7972 | 10307 | 6299 | 4780 | 75.8851 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 77.4749 | 88.1419 | 69.1110 | 56.7739 | 5887 | 792 | 6258 | 2797 | 1501 | 53.6646 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.8484 | 0.0000 | 0.0000 | 331 | 6496 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 65.9412 | 85.6091 | 53.6220 | 35.4284 | 4069 | 684 | 4049 | 3502 | 3279 | 93.6322 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 58.6790 | 56.6022 | 60.9139 | 57.4205 | 12594 | 9656 | 12597 | 8083 | 5610 | 69.4049 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 75.4245 | 87.3154 | 66.3840 | 63.3729 | 7331 | 1065 | 7751 | 3925 | 1802 | 45.9108 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.7473 | 0.0000 | 0.0000 | 388 | 7785 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 66.1516 | 85.8124 | 53.8205 | 46.0515 | 4875 | 806 | 4846 | 4158 | 3808 | 91.5825 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 63.2865 | 63.0325 | 63.5426 | 64.6177 | 19796 | 11610 | 19777 | 11347 | 6716 | 59.1875 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 75.6874 | 87.3937 | 66.7467 | 68.5588 | 12021 | 1734 | 12511 | 6233 | 2150 | 34.4938 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 4.9510 | 0.0000 | 0.0000 | 460 | 8831 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 70.2572 | 87.5000 | 58.6914 | 56.3300 | 7315 | 1045 | 7266 | 5114 | 4566 | 89.2843 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 66.3810 | 65.0448 | 67.7731 | 41.7349 | 15962 | 8578 | 15905 | 7563 | 5364 | 70.9242 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 79.9546 | 88.8056 | 72.7080 | 46.5949 | 9242 | 1165 | 9596 | 3602 | 1710 | 47.4736 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 5.1263 | 0.0000 | 0.0000 | 353 | 6533 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 72.3054 | 87.8570 | 61.4314 | 34.0186 | 6367 | 880 | 6309 | 3961 | 3654 | 92.2494 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 22.5601 | 18.5079 | 28.8840 | 55.7171 | 129 | 568 | 132 | 325 | 240 | 73.8462 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 39.6972 | 43.7037 | 36.3636 | 62.9969 | 59 | 76 | 88 | 154 | 95 | 61.6883 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 5.2953 | 0.0000 | 0.0000 | 26 | 465 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 30.7692 | 61.9718 | 20.4651 | 43.1217 | 44 | 27 | 44 | 171 | 145 | 84.7953 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 92.6865 | 93.7182 | 91.6773 | 55.0764 | 23766 | 1593 | 23694 | 2151 | 1318 | 61.2738 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.4760 | 95.9242 | 91.1498 | 55.7793 | 14168 | 602 | 14151 | 1374 | 617 | 44.9054 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 5.5961 | 0.0000 | 0.0000 | 23 | 388 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 93.2663 | 94.0755 | 92.4709 | 53.9758 | 9575 | 603 | 9543 | 777 | 701 | 90.2188 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 78.1562 | 80.3015 | 76.1225 | 51.8771 | 9535 | 2339 | 9494 | 2978 | 1387 | 46.5749 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 83.3290 | 92.2710 | 75.9669 | 53.2043 | 6196 | 519 | 6246 | 1976 | 523 | 26.4676 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 4.0857 | 0.0000 | 0.0000 | 61 | 1432 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 82.4109 | 89.4163 | 76.4235 | 49.0835 | 3278 | 388 | 3248 | 1002 | 864 | 86.2275 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 39.9506 | 39.3669 | 40.5518 | 64.0084 | 485 | 747 | 485 | 711 | 356 | 50.0703 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 54.5815 | 78.4416 | 41.8514 | 67.3617 | 302 | 83 | 321 | 446 | 114 | 25.5605 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 3.3846 | 0.0000 | 0.0000 | 22 | 628 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 52.0907 | 81.7259 | 38.2284 | 55.9096 | 161 | 36 | 164 | 265 | 242 | 91.3208 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||