PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
12751-12800 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D1_5 | decoy | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9488 | 1 | 0 | 1 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | func_cds | * | 91.8919 | 96.2264 | 87.9310 | 36.2637 | 153 | 6 | 153 | 21 | 4 | 19.0476 | |
| ciseli-custom | INDEL | D1_5 | func_cds | het | 88.2979 | 97.6471 | 80.5825 | 43.4066 | 83 | 2 | 83 | 20 | 4 | 20.0000 | |
| ciseli-custom | INDEL | D1_5 | func_cds | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | D1_5 | func_cds | homalt | 96.5517 | 94.5946 | 98.5915 | 21.9780 | 70 | 4 | 70 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 46.1795 | 45.3564 | 47.0329 | 65.4087 | 1807 | 2177 | 1815 | 2044 | 1056 | 51.6634 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 60.3870 | 78.8652 | 48.9241 | 68.3622 | 1112 | 298 | 1205 | 1258 | 386 | 30.6836 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 4.7201 | 0.0000 | 0.0000 | 86 | 1736 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 56.7644 | 80.9840 | 43.6963 | 58.5880 | 609 | 143 | 610 | 786 | 670 | 85.2417 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 66.6667 | 63.6364 | 70.0000 | 99.4592 | 7 | 4 | 7 | 3 | 1 | 33.3333 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 71.4286 | 62.5000 | 83.3333 | 99.5506 | 5 | 3 | 5 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 36.5732 | 34.6847 | 38.6792 | 60.6679 | 77 | 145 | 82 | 130 | 106 | 81.5385 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 54.6535 | 62.0000 | 48.8636 | 68.3453 | 31 | 19 | 43 | 45 | 30 | 66.6667 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 5.6000 | 0.0000 | 0.0000 | 7 | 118 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 45.6140 | 82.9787 | 31.4516 | 52.4904 | 39 | 8 | 39 | 85 | 76 | 89.4118 | |
| ciseli-custom | INDEL | * | map_l100_m0_e0 | * | 68.0279 | 62.5720 | 74.5262 | 89.7426 | 978 | 585 | 983 | 336 | 210 | 62.5000 | |
| ciseli-custom | INDEL | * | map_l100_m0_e0 | het | 69.9621 | 66.1117 | 74.2888 | 90.7085 | 675 | 346 | 679 | 235 | 131 | 55.7447 | |
| ciseli-custom | INDEL | * | map_l100_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 33 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | map_l100_m0_e0 | homalt | 66.3988 | 59.5285 | 75.0617 | 86.5938 | 303 | 206 | 304 | 101 | 79 | 78.2178 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | * | 70.4613 | 65.9230 | 75.6705 | 87.5050 | 2364 | 1222 | 2370 | 762 | 504 | 66.1417 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | het | 72.9400 | 70.5593 | 75.4869 | 88.5098 | 1577 | 658 | 1589 | 516 | 305 | 59.1085 | |
| ciseli-custom | INDEL | * | map_l100_m1_e0 | hetalt | 0.0000 | 4.8387 | 0.0000 | 0.0000 | 6 | 118 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m1_e0 | homalt | 69.2990 | 63.6512 | 76.0467 | 84.7739 | 781 | 446 | 781 | 246 | 199 | 80.8943 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | * | 70.8083 | 66.3417 | 75.9196 | 88.0680 | 2450 | 1243 | 2456 | 779 | 514 | 65.9820 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | het | 73.2740 | 70.9580 | 75.7464 | 88.9861 | 1637 | 670 | 1649 | 528 | 311 | 58.9015 | |
| ciseli-custom | INDEL | * | map_l100_m2_e0 | hetalt | 0.0000 | 4.8000 | 0.0000 | 0.0000 | 6 | 119 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m2_e0 | homalt | 69.5990 | 63.9968 | 76.2760 | 85.5956 | 807 | 454 | 807 | 251 | 203 | 80.8765 | |
| ciseli-custom | INDEL | * | map_l100_m2_e1 | * | 70.6710 | 66.2407 | 75.7364 | 88.0952 | 2488 | 1268 | 2494 | 799 | 531 | 66.4581 | |
| ciseli-custom | INDEL | * | map_l100_m2_e1 | het | 73.2415 | 70.9774 | 75.6549 | 89.0075 | 1663 | 680 | 1675 | 539 | 319 | 59.1837 | |
| ciseli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 4.5455 | 0.0000 | 0.0000 | 6 | 126 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m2_e1 | homalt | 69.4068 | 63.9344 | 75.9036 | 85.6497 | 819 | 462 | 819 | 260 | 212 | 81.5385 | |
| ciseli-custom | INDEL | * | map_l125_m0_e0 | * | 65.7143 | 59.9773 | 72.6648 | 92.6716 | 529 | 353 | 529 | 199 | 111 | 55.7789 | |
| ciseli-custom | INDEL | * | map_l125_m0_e0 | het | 66.8718 | 63.0324 | 71.2092 | 93.2956 | 370 | 217 | 371 | 150 | 76 | 50.6667 | |
| ciseli-custom | INDEL | * | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 11 | 0 | 0 | 0 | |||
| ciseli-custom | INDEL | * | map_l125_m0_e0 | homalt | 64.5934 | 55.9859 | 76.3285 | 90.4255 | 159 | 125 | 158 | 49 | 35 | 71.4286 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | * | 67.4524 | 62.0788 | 73.8444 | 90.3002 | 1308 | 799 | 1310 | 464 | 300 | 64.6552 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | het | 68.7565 | 65.3184 | 72.5766 | 91.1620 | 872 | 463 | 876 | 331 | 196 | 59.2145 | |
| ciseli-custom | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 5.0000 | 0.0000 | 0.0000 | 2 | 38 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m1_e0 | homalt | 66.8206 | 59.2896 | 76.5432 | 87.7564 | 434 | 298 | 434 | 133 | 104 | 78.1955 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | * | 67.7061 | 62.3406 | 74.0821 | 90.8144 | 1369 | 827 | 1372 | 480 | 310 | 64.5833 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | het | 68.9335 | 65.4925 | 72.7562 | 91.5977 | 911 | 480 | 916 | 343 | 203 | 59.1837 | |
| ciseli-custom | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 4.7619 | 0.0000 | 0.0000 | 2 | 40 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e0 | homalt | 67.2566 | 59.7641 | 76.8971 | 88.5455 | 456 | 307 | 456 | 137 | 107 | 78.1022 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | * | 67.9362 | 62.5618 | 74.3207 | 90.8519 | 1392 | 833 | 1395 | 482 | 312 | 64.7303 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | het | 69.1293 | 65.6960 | 72.9412 | 91.6361 | 925 | 483 | 930 | 345 | 205 | 59.4203 | |
| ciseli-custom | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 4.6512 | 0.0000 | 0.0000 | 2 | 41 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e1 | homalt | 67.5872 | 60.0775 | 77.2425 | 88.5833 | 465 | 309 | 465 | 137 | 107 | 78.1022 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | * | 63.1351 | 56.8093 | 71.0462 | 94.9719 | 292 | 222 | 292 | 119 | 60 | 50.4202 | |
| ciseli-custom | INDEL | * | map_l150_m0_e0 | het | 64.8517 | 61.2903 | 68.8525 | 95.2903 | 209 | 132 | 210 | 95 | 45 | 47.3684 | |