PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12451-12500 / 86044 show all
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50*
98.2036
97.1649
99.2647
76.2791
3771140532
66.6667
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50het
97.4748
95.8333
99.1736
75.2556
161736032
66.6667
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
97.7143
0.0000
0.0000
1714000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_11to50homalt
100.0000
100.0000
100.0000
82.2134
4504500
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200*
92.0000
88.4615
95.8333
90.9774
2332311
100.0000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200het
97.8723
100.0000
95.8333
90.5512
302311
100.0000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
86.9565
0.0000
0.0000
203000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_51to200homalt
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50*
100.0000
100.0000
100.0000
79.3814
3704000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50het
100.0000
100.0000
100.0000
79.0850
1603200
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
0.0000
0.0000
130000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
80.4878
80800
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200*
77.4194
75.0000
80.0000
64.2857
31411
100.0000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200het
66.6667
50.0000
100.0000
66.6667
11400
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELI16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
0.0000
50.0000
00011
100.0000
cchapple-customINDELI16_PLUSmap_l100_m0_e0*
96.0000
100.0000
92.3077
95.6954
1101210
0.0000
cchapple-customINDELI16_PLUSmap_l100_m0_e0het
95.2381
100.0000
90.9091
94.0860
801010
0.0000
cchapple-customINDELI16_PLUSmap_l100_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customINDELI16_PLUSmap_l100_m0_e0homalt
100.0000
100.0000
100.0000
98.2759
20200
cchapple-customINDELI16_PLUSmap_l100_m1_e0*
91.1641
96.1538
86.6667
93.9880
2512641
25.0000
cchapple-customINDELI16_PLUSmap_l100_m1_e0het
90.8397
94.4444
87.5000
92.9204
1712130
0.0000
cchapple-customINDELI16_PLUSmap_l100_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI16_PLUSmap_l100_m1_e0homalt
90.9091
100.0000
83.3333
96.2500
50511
100.0000
cchapple-customINDELI16_PLUSmap_l100_m2_e0*
91.1641
96.1538
86.6667
94.7826
2512641
25.0000
cchapple-customINDELI16_PLUSmap_l100_m2_e0het
90.8397
94.4444
87.5000
93.8931
1712130
0.0000
cchapple-customINDELI16_PLUSmap_l100_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI16_PLUSmap_l100_m2_e0homalt
90.9091
100.0000
83.3333
96.7033
50511
100.0000
cchapple-customINDELI16_PLUSmap_l100_m2_e1*
91.1641
96.1538
86.6667
94.8718
2512641
25.0000
cchapple-customINDELI16_PLUSmap_l100_m2_e1het
90.8397
94.4444
87.5000
94.0299
1712130
0.0000
cchapple-customINDELI16_PLUSmap_l100_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI16_PLUSmap_l100_m2_e1homalt
90.9091
100.0000
83.3333
96.7213
50511
100.0000
cchapple-customINDELI16_PLUSmap_l125_m0_e0*
93.3333
100.0000
87.5000
96.8254
60710
0.0000
cchapple-customINDELI16_PLUSmap_l125_m0_e0het
90.9091
100.0000
83.3333
95.9459
30510
0.0000
cchapple-customINDELI16_PLUSmap_l125_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customINDELI16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
98.0769
20200
cchapple-customINDELI16_PLUSmap_l125_m1_e0*
96.9697
100.0000
94.1176
95.6633
1501610
0.0000
cchapple-customINDELI16_PLUSmap_l125_m1_e0het
96.2963
100.0000
92.8571
94.4664
901310
0.0000
cchapple-customINDELI16_PLUSmap_l125_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELI16_PLUSmap_l125_m1_e0homalt
100.0000
100.0000
100.0000
97.8417
30300
cchapple-customINDELI16_PLUSmap_l125_m2_e0*
96.9697
100.0000
94.1176
96.2138
1501610
0.0000
cchapple-customINDELI16_PLUSmap_l125_m2_e0het
96.2963
100.0000
92.8571
95.2703
901310
0.0000
cchapple-customINDELI16_PLUSmap_l125_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000