PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12301-12350 / 86044 show all
cchapple-customSNP*func_cdshet
99.6697
99.9014
99.4391
30.1424
111501111168631
1.5873
cchapple-customSNP*func_cdshetalt
0.0000
100.0000
0.0000
0.0000
100000
cchapple-customSNP*func_cdshomalt
99.9713
99.9427
100.0000
20.5695
69754697400
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.1597
98.9715
99.3486
67.2313
4715494728314
12.9032
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.8587
98.7069
99.0109
72.0332
2977393003303
10.0000
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
99.6843
99.4279
99.9421
53.0723
173810172511
100.0000
cchapple-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.4715
99.6836
99.2603
56.9862
554551765555641457
13.7681
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.2564
99.6414
98.8744
60.9154
352921273548740450
12.3762
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
92.3077
0.0000
0.0000
121000
cchapple-customSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8562
99.7624
99.9502
47.5635
201514820069107
70.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8701
99.3283
98.4162
75.2675
453953074542573160
8.2079
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.3696
99.2268
97.5271
78.9884
284902222863272657
7.8512
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
100.0000
0.0000
0.0000
150000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7342
99.4993
99.9702
64.1818
16890851679353
60.0000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.6741
99.7905
99.5579
54.7054
428694279191
5.2632
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.5359
99.7766
99.2963
59.3496
268062681191
5.2632
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.9067
99.8135
100.0000
43.8707
16063159800
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD6_15map_l150_m2_e1het
96.4570
97.8723
95.0820
91.6438
4615831
33.3333
cchapple-customINDELD6_15map_l150_m2_e1hetalt
0.0000
77.7778
0.0000
0.0000
72000
cchapple-customINDELD6_15map_l150_m2_e1homalt
93.1034
93.1034
93.1034
85.5721
2722722
100.0000
cchapple-customINDELD6_15map_l250_m0_e0*
92.3077
100.0000
85.7143
97.2112
60610
0.0000
cchapple-customINDELD6_15map_l250_m0_e0het
88.8889
100.0000
80.0000
97.3545
40410
0.0000
cchapple-customINDELD6_15map_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD6_15map_l250_m0_e0homalt
100.0000
100.0000
100.0000
96.7742
20200
cchapple-customINDELD6_15map_l250_m1_e0*
95.0000
100.0000
90.4762
95.4936
1801920
0.0000
cchapple-customINDELD6_15map_l250_m1_e0het
93.3333
100.0000
87.5000
95.7560
1101420
0.0000
cchapple-customINDELD6_15map_l250_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELD6_15map_l250_m1_e0homalt
100.0000
100.0000
100.0000
94.3820
50500
cchapple-customINDELD6_15map_l250_m2_e0*
95.8333
100.0000
92.0000
95.3532
2202320
0.0000
cchapple-customINDELD6_15map_l250_m2_e0het
94.4444
100.0000
89.4737
95.6221
1401720
0.0000
cchapple-customINDELD6_15map_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELD6_15map_l250_m2_e0homalt
100.0000
100.0000
100.0000
94.2308
60600
cchapple-customINDELD6_15map_l250_m2_e1*
95.8333
100.0000
92.0000
95.4710
2202320
0.0000
cchapple-customINDELD6_15map_l250_m2_e1het
94.4444
100.0000
89.4737
95.7207
1401720
0.0000
cchapple-customINDELD6_15map_l250_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELD6_15map_l250_m2_e1homalt
100.0000
100.0000
100.0000
94.4444
60600
cchapple-customINDELD6_15map_siren*
94.5230
93.5167
95.5513
80.9225
476334942310
43.4783
cchapple-customINDELD6_15map_sirenhet
94.8724
94.6429
95.1031
81.6462
26515369198
42.1053
cchapple-customINDELD6_15map_sirenhetalt
0.0000
86.8687
0.0000
0.0000
8613000
cchapple-customINDELD6_15map_sirenhomalt
96.5251
96.1538
96.8992
78.3557
125512542
50.0000
cchapple-customINDELD6_15segdup*
96.8734
95.8115
97.9592
92.6811
183819244
100.0000