PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
12001-12050 / 86044 show all
cchapple-customINDELC6_15tech_badpromotershet
0.0000
100.0000
00000
cchapple-customINDELC6_15tech_badpromotershetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELC6_15tech_badpromotershomalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD16_PLUS**
96.3496
95.5041
97.2102
62.8743
64793056725193158
81.8653
cchapple-customINDELD16_PLUS*het
96.8499
96.8344
96.8654
63.8824
30591005068164133
81.0976
cchapple-customINDELD16_PLUS*hetalt
0.0000
90.8432
0.0000
0.0000
1756177000
cchapple-customINDELD16_PLUS*homalt
98.3125
98.3452
98.2800
59.3539
16642816572925
86.2069
cchapple-customINDELD16_PLUSHG002complexvar*
94.5754
92.5746
96.6646
59.3502
152112215365345
84.9057
cchapple-customINDELD16_PLUSHG002complexvarhet
95.3100
93.9476
96.7125
59.3663
10406712654336
83.7209
cchapple-customINDELD16_PLUSHG002complexvarhetalt
0.0000
82.1862
0.0000
0.0000
20344000
cchapple-customINDELD16_PLUSHG002complexvarhomalt
96.3174
96.1938
96.4413
59.2754
27811271109
90.0000
cchapple-customINDELD16_PLUSHG002compoundhet*
93.0802
91.6275
94.5797
31.0588
21451962408138135
97.8261
cchapple-customINDELD16_PLUSHG002compoundhethet
95.2281
95.0617
95.3950
30.7967
385202403116113
97.4138
cchapple-customINDELD16_PLUSHG002compoundhethetalt
0.0000
90.9751
0.0000
0.0000
1754174000
cchapple-customINDELD16_PLUSHG002compoundhethomalt
29.7030
75.0000
18.5185
49.0566
6252222
100.0000
cchapple-customINDELD16_PLUSdecoy*
100.0000
100.0000
100.0000
99.0895
60600
cchapple-customINDELD16_PLUSdecoyhet
100.0000
100.0000
100.0000
99.2819
40400
cchapple-customINDELD16_PLUSdecoyhetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.0392
20200
cchapple-customINDELD16_PLUSfunc_cds*
86.9565
83.3333
90.9091
75.5556
1021011
100.0000
cchapple-customINDELD16_PLUSfunc_cdshet
87.5000
87.5000
87.5000
77.7778
71711
100.0000
cchapple-customINDELD16_PLUSfunc_cdshetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD16_PLUSfunc_cdshomalt
85.7143
75.0000
100.0000
66.6667
31300
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_merged*
92.5741
90.8365
94.3795
65.5301
19331952099125115
92.0000
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
93.4668
92.7820
94.1618
66.2439
61748162910195
94.0594
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
86.6667
0.0000
0.0000
845130000
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_51to200bp_gt95identity_mergedhomalt
95.8241
96.5164
95.1417
62.7732
471174702420
83.3333
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
99.5012
22200
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.3976
10200
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
02000
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_merged*
96.8519
95.9843
97.7354
64.7626
341814335398270
85.3659
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
96.6415
96.0148
97.2764
66.3029
13015426437462
83.7838
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
0.0000
93.9722
0.0000
0.0000
121678000
cchapple-customINDELD16_PLUSlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.9542
98.7939
99.1150
59.1505
9011189688
100.0000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331*
95.3539
94.1988
96.5376
67.5442
47092904963178155
87.0787
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331het
95.6652
95.1622
96.1736
68.5790
1731883745149130
87.2483
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
0.0000
90.8338
0.0000
0.0000
1754177000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.8361
97.9984
97.6744
63.8236
12242512182925
86.2069
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
94.4702
93.2292
95.7447
81.9664
358263601612
75.0000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
93.4351
93.0348
93.8389
85.0989
187141981311
84.6154
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
72.7273
0.0000
0.0000
83000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
96.4444
94.7674
98.1818
75.3363
163916231
33.3333
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
66.6667
50.0000
100.0000
99.4911
22200
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.3846
10200
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
02000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.2263
97.4515
99.0136
67.7535
8032180388
100.0000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
97.7635
97.0721
98.4649
72.6946
4311344977
100.0000
cchapple-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
0.0000
89.4737
0.0000
0.0000
172000