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Explore HG002 comparison results
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Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11801-11850 / 86044 show all
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6381
99.8312
97.4731
45.6429
2366423536161
100.0000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
97.0372
96.1312
97.9605
45.4439
1421357215466322303
94.0994
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
97.8606
97.3459
98.3807
45.3197
432811812333203185
91.1330
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
0.0000
93.8389
0.0000
0.0000
6732442000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.9533
99.6209
96.3407
45.9172
3153123133119118
99.1597
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.0337
96.0444
98.0437
49.4938
1697269918343366341
93.1694
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
97.6874
96.9552
98.4307
49.3864
566817814614233211
90.5579
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
0.0000
93.7213
0.0000
0.0000
7553506000
cchapple-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.0553
99.6017
96.5562
49.9027
3751153729133130
97.7444
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50*
97.6494
97.0713
98.2344
36.6573
918127710015180172
95.5556
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50het
98.1374
97.6583
98.6213
37.9185
2669648083113105
92.9204
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50hetalt
0.0000
95.7041
0.0000
0.0000
4567205000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.0973
99.5904
96.6483
30.9022
1945819326767
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200*
84.4118
79.2549
90.2866
33.4746
9362451134122120
98.3607
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200het
85.9187
79.7297
93.1494
34.9226
118309797270
97.2222
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
75.9174
0.0000
0.0000
662210000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
84.9390
96.8944
75.6098
24.9084
15651555050
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10*
98.6709
98.4962
98.8462
81.0219
262425733
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
99.4624
100.0000
98.9305
81.6667
155018522
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
0.0000
91.8919
0.0000
0.0000
343000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10homalt
98.6394
98.6486
98.6301
79.1429
7317211
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10*
83.3241
82.4561
84.2105
99.3544
47104891
11.1111
cchapple-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10het
81.8131
80.9524
82.6923
99.2172
3484391
11.1111
cchapple-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
88.8889
0.0000
0.0000
81000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_homopolymer_gt10homalt
90.9091
83.3333
100.0000
99.7713
51500
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50*
98.7204
98.1014
99.3473
45.8867
36177036532422
91.6667
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
98.6497
97.9456
99.3640
46.2896
16213428121816
88.8889
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
0.0000
97.2927
0.0000
0.0000
115032000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4104
99.5294
99.2916
44.4954
846484166
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200*
95.2014
93.3840
97.0909
41.7126
12288713354033
82.5000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200het
94.6679
92.1212
97.3595
41.8524
3042611433126
83.8710
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
92.4338
0.0000
0.0000
73360000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_51to200homalt
97.4606
99.4792
95.5224
40.8824
191119297
77.7778
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4269
99.0751
99.7811
30.6904
171416182343
75.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50het
99.1404
98.4353
99.8557
31.3181
69211138421
50.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
99.3151
0.0000
0.0000
5804000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.6602
99.7743
99.5465
28.6408
442143922
100.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200*
96.2467
94.3662
98.2036
32.9317
134816432
66.6667
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200het
92.7323
87.5000
98.6301
33.6364
21314421
50.0000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
94.8454
0.0000
0.0000
925000
cchapple-customINDELD6_15lowcmp_SimpleRepeat_triTR_51to200homalt
97.5610
100.0000
95.2381
27.5862
2102011
100.0000
cchapple-customINDELD6_15map_l100_m0_e0*
92.4677
93.2039
91.7431
86.9617
96710094
44.4444
cchapple-customINDELD6_15map_l100_m0_e0het
93.5871
96.6667
90.6977
87.0091
5827883
37.5000
cchapple-customINDELD6_15map_l100_m0_e0hetalt
0.0000
84.2105
0.0000
0.0000
163000
cchapple-customINDELD6_15map_l100_m0_e0homalt
93.6170
91.6667
95.6522
86.7816
2222211
100.0000
cchapple-customINDELD6_15map_l100_m1_e0*
92.6206
91.0853
94.2085
83.6799
23523244158
53.3333