PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11701-11750 / 86044 show all
cchapple-customINDELD1_5map_l150_m2_e1homalt
97.7471
96.3710
99.1632
86.0885
239923722
100.0000
cchapple-customINDELD1_5map_l250_m0_e0*
94.6237
95.6522
93.6170
97.1567
4424430
0.0000
cchapple-customINDELD1_5map_l250_m0_e0het
92.5373
93.9394
91.1765
97.1878
3123130
0.0000
cchapple-customINDELD1_5map_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD1_5map_l250_m0_e0homalt
100.0000
100.0000
100.0000
97.0721
1301300
cchapple-customINDELD1_5map_l250_m1_e0*
94.8142
97.0760
92.6554
94.4234
1665164131
7.6923
cchapple-customINDELD1_5map_l250_m1_e0het
93.1984
97.2973
89.4309
94.7682
1083110131
7.6923
cchapple-customINDELD1_5map_l250_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELD1_5map_l250_m1_e0homalt
98.2143
96.4912
100.0000
93.4386
5525400
cchapple-customINDELD1_5map_l250_m2_e0*
94.6665
97.2826
92.1875
94.6711
1795177151
6.6667
cchapple-customINDELD1_5map_l250_m2_e0het
93.0049
97.5207
88.8889
94.9457
1183120151
6.6667
cchapple-customINDELD1_5map_l250_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELD1_5map_l250_m2_e0homalt
98.3051
96.6667
100.0000
93.8841
5825700
cchapple-customINDELD1_5map_l250_m2_e1*
94.6948
97.2973
92.2280
94.7767
1805178151
6.6667
cchapple-customINDELD1_5map_l250_m2_e1het
93.0589
97.5410
88.9706
95.0292
1193121151
6.6667
cchapple-customINDELD1_5map_l250_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customINDELD1_5map_l250_m2_e1homalt
98.3051
96.6667
100.0000
94.0563
5825700
cchapple-customINDELD1_5map_siren*
97.4907
98.1298
96.8600
78.7253
346366342411114
12.6126
cchapple-customINDELD1_5map_sirenhet
97.0834
98.5946
95.6177
79.2698
224532229110510
9.5238
cchapple-customINDELD1_5map_sirenhetalt
0.0000
86.9048
0.0000
0.0000
7311000
cchapple-customINDELD1_5map_sirenhomalt
98.7468
98.0308
99.4732
77.4812
114523113364
66.6667
cchapple-customINDELD1_5segdup*
99.4547
99.1840
99.7268
94.3229
10949109530
0.0000
cchapple-customINDELD1_5segduphet
99.1458
98.6994
99.5962
94.5834
683974030
0.0000
cchapple-customINDELD1_5segduphetalt
0.0000
100.0000
0.0000
0.0000
520000
cchapple-customINDELD1_5segduphomalt
100.0000
100.0000
100.0000
93.6878
359035500
cchapple-customINDELD1_5segdupwithalt*
100.0000
100.0000
100.0000
99.9937
10100
cchapple-customINDELD1_5segdupwithalthet
100.0000
100.0000
100.0000
99.9913
10100
cchapple-customINDELD1_5segdupwithalthetalt
0.0000
0.0000
0.0000
00000
cchapple-customINDELD1_5segdupwithalthomalt
0.0000
100.0000
00000
cchapple-customINDELD1_5tech_badpromoters*
97.2973
94.7368
100.0000
41.9355
1811800
cchapple-customINDELD1_5tech_badpromotershet
93.3333
87.5000
100.0000
47.0588
71900
cchapple-customINDELD1_5tech_badpromotershetalt
0.0000
100.0000
0.0000
0.0000
20000
cchapple-customINDELD1_5tech_badpromotershomalt
100.0000
100.0000
100.0000
35.7143
90900
cchapple-customINDELD6_15**
97.8623
97.1869
98.5472
48.1960
2535873426658393348
88.5496
cchapple-customINDELD6_15*het
98.5018
98.2488
98.7561
48.6146
1138920320403257215
83.6576
cchapple-customINDELD6_15*hetalt
0.0000
93.7852
0.0000
0.0000
7666508000
cchapple-customINDELD6_15*homalt
98.7463
99.6364
97.8720
46.7949
6303236255136133
97.7941
cchapple-customINDELD6_15HG002complexvar*
96.6422
95.3791
97.9391
52.4803
5057245508510798
91.5888
cchapple-customINDELD6_15HG002complexvarhet
97.1892
96.5064
97.8818
52.6751
301110939748677
89.5349
cchapple-customINDELD6_15HG002complexvarhetalt
0.0000
87.4630
0.0000
0.0000
886127000
cchapple-customINDELD6_15HG002complexvarhomalt
98.6845
99.2301
98.1449
51.7682
1160911112121
100.0000
cchapple-customINDELD6_15HG002compoundhet*
95.2970
93.9320
96.7022
31.4437
84835489882337326
96.7359
cchapple-customINDELD6_15HG002compoundhethet
96.2282
94.6262
97.8854
30.8078
810469860213202
94.8357
cchapple-customINDELD6_15HG002compoundhethetalt
0.0000
93.8412
0.0000
0.0000
7649502000
cchapple-customINDELD6_15HG002compoundhethomalt
26.1905
100.0000
15.0685
58.0460
24022124124
100.0000
cchapple-customINDELD6_15decoy*
100.0000
100.0000
100.0000
99.9217
10100
cchapple-customINDELD6_15decoyhet
0.0000
0.0000
100.0000
99.9088
00100
cchapple-customINDELD6_15decoyhetalt
0.0000
100.0000
0.0000
0.0000
10000
cchapple-customINDELD6_15decoyhomalt
0.0000
100.0000
00000
cchapple-customINDELD6_15func_cds*
98.8235
97.6744
100.0000
47.5000
4214200