PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
11101-11150 / 86044 show all
cchapple-customSNP*map_l100_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
410000
cchapple-customSNP*map_l100_m1_e0homalt
98.7154
97.4707
99.9924
55.8509
263206832631022
100.0000
cchapple-customSNP*map_l100_m2_e0*
97.5457
97.7435
97.3487
69.9609
722951669722971969408
20.7212
cchapple-customSNP*map_l100_m2_e0het
96.8591
97.8857
95.8537
73.9797
45418981454731967406
20.6406
cchapple-customSNP*map_l100_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
420000
cchapple-customSNP*map_l100_m2_e0homalt
98.7307
97.5003
99.9925
58.6733
268356882682422
100.0000
cchapple-customSNP*map_l100_m2_e1*
97.5551
97.7575
97.3536
69.9828
730611676730601986410
20.6445
cchapple-customSNP*map_l100_m2_e1het
96.8714
97.9018
95.8624
74.0033
45914984459671984408
20.5645
cchapple-customSNP*map_l100_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
430000
cchapple-customSNP*map_l100_m2_e1homalt
98.7359
97.5104
99.9926
58.6714
271046922709322
100.0000
cchapple-customSNP*map_l125_m0_e0*
96.1705
96.0794
96.2618
77.2988
1862576018618723176
24.3430
cchapple-customSNP*map_l125_m0_e0het
95.3778
96.3598
94.4157
80.7050
1220346112207722175
24.2382
cchapple-customSNP*map_l125_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
90000
cchapple-customSNP*map_l125_m0_e0homalt
97.7145
95.5453
99.9844
64.7518
6413299641111
100.0000
cchapple-customSNP*map_l125_m1_e0*
96.8884
97.0680
96.7095
73.1758
439981329439981497343
22.9125
cchapple-customSNP*map_l125_m1_e0het
96.0557
97.2739
94.8677
77.0814
27618774276531496342
22.8610
cchapple-customSNP*map_l125_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
300000
cchapple-customSNP*map_l125_m1_e0homalt
98.3281
96.7169
99.9939
61.4654
163505551634511
100.0000
cchapple-customSNP*map_l125_m2_e0*
96.9367
97.1235
96.7507
75.0489
453791344453791524347
22.7690
cchapple-customSNP*map_l125_m2_e0het
96.1245
97.3395
94.9395
78.6207
28538780285731523346
22.7183
cchapple-customSNP*map_l125_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
300000
cchapple-customSNP*map_l125_m2_e0homalt
98.3473
96.7540
99.9941
64.3980
168115641680611
100.0000
cchapple-customSNP*map_l125_m2_e1*
96.9542
97.1463
96.7628
75.1056
458551347458521534347
22.6206
cchapple-customSNP*map_l125_m2_e1het
96.1447
97.3583
94.9610
78.6712
28857783288901533346
22.5701
cchapple-customSNP*map_l125_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
300000
cchapple-customSNP*map_l125_m2_e1homalt
98.3624
96.7830
99.9941
64.4456
169685641696211
100.0000
cchapple-customSNP*map_l150_m0_e0*
95.8209
95.5951
96.0478
81.9455
1150253011495473120
25.3700
cchapple-customSNP*map_l150_m0_e0het
94.9871
95.8312
94.1577
84.6817
76093317607472119
25.2119
cchapple-customSNP*map_l150_m0_e0hetalt
0.0000
100.0000
0.0000
0.0000
30000
cchapple-customSNP*map_l150_m0_e0homalt
97.4937
95.1333
99.9743
71.2925
3890199388811
100.0000
cchapple-customSNP*map_l150_m1_e0*
96.5908
96.7363
96.4458
77.1687
29610999296051091240
21.9982
cchapple-customSNP*map_l150_m1_e0het
95.6722
96.8731
94.5008
80.5876
18712604187311090239
21.9266
cchapple-customSNP*map_l150_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
200000
cchapple-customSNP*map_l150_m1_e0homalt
98.2123
96.4961
99.9908
66.3750
108783951087411
100.0000
cchapple-customSNP*map_l150_m2_e0*
96.6523
96.8134
96.4917
78.8019
308371015308321121246
21.9447
cchapple-customSNP*map_l150_m2_e0het
95.7599
96.9701
94.5794
81.9061
19523610195421120245
21.8750
cchapple-customSNP*map_l150_m2_e0hetalt
0.0000
100.0000
0.0000
0.0000
200000
cchapple-customSNP*map_l150_m2_e0homalt
98.2343
96.5382
99.9911
69.1013
112944051129011
100.0000
cchapple-customSNP*map_l150_m2_e1*
96.6680
96.8395
96.4971
78.8652
311921018311841132247
21.8198
cchapple-customSNP*map_l150_m2_e1het
95.7763
96.9945
94.5883
81.9692
19751612197681131246
21.7507
cchapple-customSNP*map_l150_m2_e1hetalt
0.0000
100.0000
0.0000
0.0000
200000
cchapple-customSNP*map_l150_m2_e1homalt
98.2494
96.5672
99.9912
69.1407
114214061141611
100.0000
cchapple-customSNP*map_l250_m0_e0*
95.4584
94.5667
96.3671
93.6675
201911620167621
27.6316
cchapple-customSNP*map_l250_m0_e0het
94.5598
94.1567
94.9664
94.4554
14188814157520
26.6667
cchapple-customSNP*map_l250_m0_e0hetalt
0.0000
0.0000
0.0000
00000
cchapple-customSNP*map_l250_m0_e0homalt
97.6442
95.5485
99.8339
90.2320
6012860111
100.0000
cchapple-customSNP*map_l250_m1_e0*
96.0890
95.7906
96.3892
89.6069
6918304691425962
23.9382
cchapple-customSNP*map_l250_m1_e0het
95.0712
95.5205
94.6261
91.1826
4542213454325861
23.6434
cchapple-customSNP*map_l250_m1_e0hetalt
0.0000
100.0000
0.0000
0.0000
40000
cchapple-customSNP*map_l250_m1_e0homalt
98.0976
96.3053
99.9578
83.7177
237291237111
100.0000