PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10851-10900 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 50.0000 | 100.0000 | 94.7368 | 1 | 1 | 1 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | map_l100_m0_e0 | * | 96.8619 | 96.6377 | 97.0872 | 70.6515 | 21039 | 732 | 21032 | 631 | 173 | 27.4168 | |
| cchapple-custom | SNP | ti | map_l100_m0_e0 | het | 96.2084 | 96.8676 | 95.5581 | 74.9532 | 13545 | 438 | 13553 | 630 | 172 | 27.3016 | |
| cchapple-custom | SNP | ti | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 14 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m0_e0 | homalt | 98.0662 | 96.2182 | 99.9866 | 56.4787 | 7480 | 294 | 7479 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | * | 97.7073 | 97.6424 | 97.7722 | 66.9622 | 46801 | 1130 | 46783 | 1066 | 270 | 25.3283 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | het | 97.1277 | 97.7690 | 96.4947 | 71.3539 | 29274 | 668 | 29290 | 1064 | 268 | 25.1880 | |
| cchapple-custom | SNP | ti | map_l100_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 29 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m1_e0 | homalt | 98.6915 | 97.4276 | 99.9886 | 54.9898 | 17498 | 462 | 17493 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l100_m2_e0 | * | 97.7249 | 97.6634 | 97.7865 | 68.9717 | 47817 | 1144 | 47800 | 1082 | 275 | 25.4159 | |
| cchapple-custom | SNP | ti | map_l100_m2_e0 | het | 97.1509 | 97.7892 | 96.5210 | 73.0558 | 29945 | 677 | 29963 | 1080 | 273 | 25.2778 | |
| cchapple-custom | SNP | ti | map_l100_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 30 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m2_e0 | homalt | 98.7027 | 97.4493 | 99.9888 | 57.8553 | 17842 | 467 | 17837 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l100_m2_e1 | * | 97.7339 | 97.6781 | 97.7898 | 68.9863 | 48336 | 1149 | 48316 | 1092 | 276 | 25.2747 | |
| cchapple-custom | SNP | ti | map_l100_m2_e1 | het | 97.1612 | 97.8036 | 96.5271 | 73.0715 | 30280 | 680 | 30296 | 1090 | 274 | 25.1376 | |
| cchapple-custom | SNP | ti | map_l100_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 31 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l100_m2_e1 | homalt | 98.7103 | 97.4640 | 99.9889 | 57.8502 | 18025 | 469 | 18020 | 2 | 2 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m0_e0 | * | 96.3333 | 95.8549 | 96.8166 | 76.6174 | 12233 | 529 | 12226 | 402 | 120 | 29.8507 | |
| cchapple-custom | SNP | ti | map_l125_m0_e0 | het | 95.6528 | 96.1152 | 95.1947 | 80.1979 | 7942 | 321 | 7944 | 401 | 119 | 29.6758 | |
| cchapple-custom | SNP | ti | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 8 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m0_e0 | homalt | 97.6182 | 95.3685 | 99.9767 | 63.8992 | 4283 | 208 | 4282 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | * | 97.0755 | 96.9422 | 97.2092 | 72.6876 | 28438 | 897 | 28423 | 816 | 227 | 27.8186 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | het | 96.3594 | 97.1203 | 95.6103 | 76.7136 | 17740 | 526 | 17751 | 815 | 226 | 27.7301 | |
| cchapple-custom | SNP | ti | map_l125_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m1_e0 | homalt | 98.2873 | 96.6410 | 99.9906 | 60.9405 | 10674 | 371 | 10672 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | * | 97.1171 | 96.9958 | 97.2387 | 74.5555 | 29349 | 909 | 29334 | 833 | 230 | 27.6110 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | het | 96.4167 | 97.1816 | 95.6637 | 78.2290 | 18344 | 532 | 18355 | 832 | 229 | 27.5240 | |
| cchapple-custom | SNP | ti | map_l125_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m2_e0 | homalt | 98.3080 | 96.6808 | 99.9909 | 63.9160 | 10981 | 377 | 10979 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | * | 97.1333 | 97.0166 | 97.2504 | 74.6114 | 29657 | 912 | 29639 | 838 | 230 | 27.4463 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | het | 96.4352 | 97.1970 | 95.6851 | 78.2763 | 18552 | 535 | 18561 | 837 | 229 | 27.3596 | |
| cchapple-custom | SNP | ti | map_l125_m2_e1 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 24 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l125_m2_e1 | homalt | 98.3230 | 96.7097 | 99.9910 | 63.9684 | 11081 | 377 | 11078 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | * | 95.9984 | 95.3950 | 96.6095 | 81.4997 | 7499 | 362 | 7494 | 263 | 77 | 29.2776 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | het | 95.1985 | 95.5072 | 94.8918 | 84.4938 | 4868 | 229 | 4867 | 262 | 76 | 29.0076 | |
| cchapple-custom | SNP | ti | map_l150_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 3 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m0_e0 | homalt | 97.5139 | 95.1829 | 99.9619 | 70.3118 | 2628 | 133 | 2627 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | * | 96.7874 | 96.6213 | 96.9540 | 76.8102 | 19046 | 666 | 19034 | 598 | 159 | 26.5886 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | het | 95.9987 | 96.7583 | 95.2510 | 80.3175 | 11969 | 401 | 11974 | 597 | 158 | 26.4657 | |
| cchapple-custom | SNP | ti | map_l150_m1_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m1_e0 | homalt | 98.1515 | 96.3832 | 99.9858 | 66.0349 | 7062 | 265 | 7060 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | * | 96.8497 | 96.6995 | 97.0004 | 78.4535 | 19835 | 677 | 19823 | 613 | 163 | 26.5905 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | het | 96.0807 | 96.8481 | 95.3254 | 81.6490 | 12475 | 406 | 12480 | 612 | 162 | 26.4706 | |
| cchapple-custom | SNP | ti | map_l150_m2_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 15 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | map_l150_m2_e0 | homalt | 98.1821 | 96.4417 | 99.9864 | 68.7543 | 7345 | 271 | 7343 | 1 | 1 | 100.0000 | |