PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
10801-10850 / 86044 show all | |||||||||||||||
| cchapple-custom | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | tv | tech_badpromoters | homalt | 97.4021 | 97.4359 | 97.3684 | 49.3333 | 38 | 1 | 37 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.2818 | 96.6216 | 100.0000 | 72.0930 | 429 | 15 | 420 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3143 | 96.0145 | 98.6499 | 82.5698 | 1060 | 44 | 1096 | 15 | 12 | 80.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 96.6872 | 95.4167 | 97.9920 | 85.6042 | 687 | 33 | 732 | 15 | 12 | 80.0000 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5430 | 97.1279 | 100.0000 | 69.2827 | 372 | 11 | 364 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.2560 | 99.0686 | 99.4441 | 78.7870 | 6595 | 62 | 6619 | 37 | 15 | 40.5405 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 99.0491 | 98.9618 | 99.1365 | 81.8417 | 4194 | 44 | 4248 | 37 | 15 | 40.5405 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6262 | 99.2553 | 100.0000 | 69.5205 | 2399 | 18 | 2371 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.1128 | 99.3482 | 98.8786 | 72.9414 | 30940 | 203 | 30949 | 351 | 41 | 11.6809 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7584 | 99.2747 | 98.2475 | 76.8599 | 19437 | 142 | 19509 | 348 | 40 | 11.4943 | |
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 12 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7222 | 99.4720 | 99.9738 | 61.6817 | 11491 | 61 | 11440 | 3 | 1 | 33.3333 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.1207 | 98.7596 | 99.4845 | 63.9164 | 4777 | 60 | 4825 | 25 | 19 | 76.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 98.9388 | 98.5705 | 99.3099 | 68.9036 | 3103 | 45 | 3166 | 22 | 16 | 72.7273 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4642 | 99.1114 | 99.8195 | 47.8833 | 1673 | 15 | 1659 | 3 | 3 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 93.3333 | 87.5000 | 100.0000 | 96.7290 | 14 | 2 | 14 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 88.8889 | 80.0000 | 100.0000 | 97.8723 | 8 | 2 | 8 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 88.4615 | 6 | 0 | 6 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.8802 | 99.9362 | 99.8243 | 43.3188 | 6264 | 4 | 6250 | 11 | 3 | 27.2727 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.8769 | 99.9262 | 99.8277 | 45.6225 | 4062 | 3 | 4055 | 7 | 1 | 14.2857 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 2 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8863 | 99.9546 | 99.8181 | 38.5067 | 2200 | 1 | 2195 | 4 | 2 | 50.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.6239 | 99.8416 | 99.4072 | 41.3357 | 10715 | 17 | 10732 | 64 | 7 | 10.9375 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4328 | 99.7924 | 99.0758 | 46.4998 | 6730 | 14 | 6754 | 63 | 6 | 9.5238 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9498 | 99.9248 | 99.9749 | 29.7121 | 3984 | 3 | 3978 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.7853 | 89.1089 | 98.9796 | 92.5362 | 90 | 11 | 97 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 92.8800 | 87.8788 | 98.4848 | 94.0000 | 58 | 8 | 65 | 1 | 1 | 100.0000 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 95.5224 | 91.4286 | 100.0000 | 84.9765 | 32 | 3 | 32 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7439 | 99.7184 | 99.7695 | 31.0247 | 3895 | 11 | 3895 | 9 | 3 | 33.3333 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6976 | 99.7579 | 99.6374 | 34.5809 | 2472 | 6 | 2473 | 9 | 3 | 33.3333 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 1 | 0 | 0 | 0 | |||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8596 | 99.7197 | 100.0000 | 23.7942 | 1423 | 4 | 1422 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 76.9231 | 62.5000 | 100.0000 | 95.9350 | 5 | 3 | 5 | 0 | 0 | ||
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 66.6667 | 100.0000 | 96.1538 | 4 | 2 | 4 | 0 | 0 | ||