PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84151-84200 / 86044 show all
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.8092
99.6190
100.0000
69.3435
523252300
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
97.5422
96.3636
98.7500
90.1356
159615820
0.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
97.5376
95.9677
99.1597
89.6970
119511810
0.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
97.5610
97.5610
97.5610
91.2206
4014010
0.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged*
99.2965
99.2968
99.2963
87.3102
1412101411106
60.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhet
99.1242
99.2333
99.0153
88.2398
906790596
66.6667
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.6047
99.4083
99.8020
85.1950
504350410
0.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.5262
99.6838
99.3691
86.9359
12614126086
75.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.3720
99.7481
98.9987
88.0853
792279186
75.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.7863
99.5736
100.0000
84.3551
467246700
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6260
99.6141
99.6379
82.9126
4130164128158
53.3333
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.5465
99.6219
99.4711
83.1776
2635102633148
57.1429
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.3125
30300
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7660
99.5995
99.9330
82.3251
14926149210
0.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.4197
99.4416
99.3979
75.9193
90825190805515
27.2727
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7694
99.7050
99.8338
75.7174
540716540792
22.2222
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6705
99.6705
99.6705
66.2895
48401648401613
81.2500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50het
99.6119
99.7409
99.4832
68.3306
3080830801613
81.2500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7731
99.5473
100.0000
61.8604
17598175900
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_51to200*
85.1064
76.9231
95.2381
96.3918
2062010
0.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_51to200het
82.7586
70.5882
100.0000
97.2158
1251200
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
88.8889
88.8889
88.8889
94.0000
81810
0.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9221
99.8717
99.9725
60.1200
10897141089332
66.6667
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.9002
99.8433
99.9572
60.4236
700811700432
66.6667
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9228
100.0000
59.5375
38843388400
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.8457
99.8792
99.8121
39.2368
744397438143
21.4286
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50het
99.8719
99.8294
99.9145
39.6596
46818467641
25.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
58.3333
50500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.8009
99.9637
99.6386
38.4564
275712757102
20.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200*
97.6190
97.6190
97.6190
89.3401
4114111
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200het
98.5915
97.2222
100.0000
88.5621
3513500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
100.0000
85.7143
92.0455
60611
100.0000