PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83651-83700 / 86044 show all | |||||||||||||||
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 95.7447 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m1_e0 | homalt | 98.7013 | 98.7013 | 98.7013 | 88.1081 | 456 | 6 | 456 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | * | 97.9323 | 97.4432 | 98.4263 | 99.0377 | 1372 | 36 | 1376 | 22 | 10 | 45.4545 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | het | 97.6106 | 96.7991 | 98.4358 | 89.4308 | 877 | 29 | 881 | 14 | 5 | 35.7143 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | hetalt | 93.0233 | 95.2381 | 90.9091 | 96.2901 | 20 | 1 | 20 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e0 | homalt | 98.7526 | 98.7526 | 98.7526 | 89.0183 | 475 | 6 | 475 | 6 | 5 | 83.3333 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | * | 97.8375 | 97.3593 | 98.3205 | 99.0326 | 1401 | 38 | 1405 | 24 | 12 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | het | 97.5486 | 96.7532 | 98.3571 | 89.4487 | 894 | 30 | 898 | 15 | 6 | 40.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | hetalt | 91.3043 | 91.3043 | 91.3043 | 96.2602 | 21 | 2 | 21 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m2_e1 | homalt | 98.6802 | 98.7805 | 98.5801 | 89.0274 | 486 | 6 | 486 | 7 | 6 | 85.7143 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | * | 92.9936 | 93.5897 | 92.4051 | 99.8422 | 73 | 5 | 73 | 6 | 2 | 33.3333 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.6318 | 49 | 4 | 49 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 99.3464 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| rpoplin-dv42 | INDEL | * | map_l250_m0_e0 | homalt | 96.0000 | 96.0000 | 96.0000 | 97.4093 | 24 | 1 | 24 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | * | 96.0396 | 95.4098 | 96.6777 | 99.6478 | 291 | 14 | 291 | 10 | 5 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | het | 95.4667 | 94.2105 | 96.7568 | 95.6957 | 179 | 11 | 179 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 97.7564 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | homalt | 97.2477 | 97.2477 | 97.2477 | 94.7596 | 106 | 3 | 106 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | * | 96.3526 | 95.7704 | 96.9419 | 99.6591 | 317 | 14 | 317 | 10 | 5 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | het | 95.9036 | 94.7619 | 97.0732 | 95.8061 | 199 | 11 | 199 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1333 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | homalt | 97.3913 | 97.3913 | 97.3913 | 95.1963 | 112 | 3 | 112 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | * | 96.3746 | 95.7958 | 96.9605 | 99.6645 | 319 | 14 | 319 | 10 | 5 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | het | 95.9233 | 94.7867 | 97.0874 | 95.8874 | 200 | 11 | 200 | 6 | 3 | 50.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1771 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | homalt | 97.4138 | 97.4138 | 97.4138 | 95.3036 | 113 | 3 | 113 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | INDEL | * | map_siren | * | 98.4035 | 98.0972 | 98.7117 | 97.1910 | 7269 | 141 | 7279 | 95 | 49 | 51.5789 | |
| rpoplin-dv42 | INDEL | * | map_siren | het | 98.2013 | 98.0257 | 98.3774 | 81.3714 | 4419 | 89 | 4426 | 73 | 37 | 50.6849 | |
| rpoplin-dv42 | INDEL | * | map_siren | hetalt | 93.4218 | 89.0688 | 98.2222 | 87.9936 | 220 | 27 | 221 | 4 | 1 | 25.0000 | |
| rpoplin-dv42 | INDEL | * | map_siren | homalt | 99.1894 | 99.0584 | 99.3208 | 79.6138 | 2630 | 25 | 2632 | 18 | 11 | 61.1111 | |
| rpoplin-dv42 | INDEL | * | segdup | * | 98.8630 | 98.5915 | 99.1359 | 99.1675 | 2520 | 36 | 2524 | 22 | 21 | 95.4545 | |
| rpoplin-dv42 | INDEL | * | segdup | het | 98.8084 | 98.8404 | 98.7763 | 94.3566 | 1449 | 17 | 1453 | 18 | 17 | 94.4444 | |
| rpoplin-dv42 | INDEL | * | segdup | hetalt | 96.4143 | 93.0769 | 100.0000 | 95.1464 | 121 | 9 | 121 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | segdup | homalt | 99.2685 | 98.9583 | 99.5807 | 93.3565 | 950 | 10 | 950 | 4 | 4 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9996 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9953 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | segdupwithalt | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | * | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | * | tech_badpromoters | * | 98.6842 | 98.6842 | 98.6842 | 90.5824 | 75 | 1 | 75 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | het | 98.7342 | 100.0000 | 97.5000 | 49.3671 | 39 | 0 | 39 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | tech_badpromoters | homalt | 98.4615 | 96.9697 | 100.0000 | 60.9756 | 32 | 1 | 32 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | C16_PLUS | * | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C16_PLUS | * | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| rpoplin-dv42 | INDEL | C16_PLUS | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | * | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002complexvar | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002complexvar | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002complexvar | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| rpoplin-dv42 | INDEL | C16_PLUS | HG002complexvar | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||