PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80601-80650 / 86044 show all | |||||||||||||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 86.6613 | 87.3341 | 85.9988 | 44.9670 | 12039 | 1746 | 13212 | 2151 | 1124 | 52.2548 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 89.5573 | 95.0633 | 84.6541 | 45.2951 | 3678 | 191 | 10586 | 1919 | 912 | 47.5248 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 80.6665 | 100.0000 | 5737 | 1375 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 92.7237 | 93.5806 | 91.8824 | 43.4731 | 2624 | 180 | 2626 | 232 | 212 | 91.3793 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 89.7127 | 90.8139 | 88.6378 | 45.2529 | 10064 | 1018 | 10984 | 1408 | 719 | 51.0653 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.7464 | 96.2737 | 87.6259 | 45.7712 | 3152 | 122 | 8703 | 1229 | 548 | 44.5891 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 85.1600 | 0.0000 | 0.0000 | 4631 | 807 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 94.4513 | 96.2447 | 92.7236 | 43.0556 | 2281 | 89 | 2281 | 179 | 171 | 95.5307 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 87.2372 | 87.9811 | 86.5058 | 47.3544 | 13008 | 1777 | 14193 | 2214 | 1144 | 51.6712 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 89.9539 | 95.3891 | 85.1048 | 47.7198 | 4241 | 205 | 11210 | 1962 | 925 | 47.1458 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 80.6384 | 100.0000 | 5785 | 1389 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 93.2033 | 94.2180 | 92.2102 | 45.7942 | 2982 | 183 | 2983 | 252 | 219 | 86.9048 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 88.1261 | 88.9650 | 87.3028 | 53.9810 | 15721 | 1950 | 17045 | 2479 | 1231 | 49.6571 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 90.5625 | 95.5867 | 86.0400 | 54.3416 | 5588 | 258 | 13473 | 2186 | 990 | 45.2882 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 81.4493 | 100.0000 | 6564 | 1495 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 93.5793 | 94.7690 | 92.4191 | 52.4483 | 3569 | 197 | 3572 | 293 | 241 | 82.2526 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 88.6540 | 89.8499 | 87.4895 | 45.7726 | 8498 | 960 | 9343 | 1336 | 702 | 52.5449 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 91.0906 | 96.0483 | 86.6196 | 46.4616 | 2625 | 108 | 7477 | 1155 | 540 | 46.7532 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 83.8433 | 0.0000 | 0.0000 | 4001 | 771 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 93.4462 | 95.8525 | 91.1578 | 42.6611 | 1872 | 81 | 1866 | 181 | 162 | 89.5028 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 52.6084 | 47.9255 | 58.3056 | 39.7096 | 566 | 615 | 702 | 502 | 328 | 65.3386 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 62.5431 | 70.2703 | 56.3470 | 39.8682 | 104 | 44 | 617 | 478 | 306 | 64.0167 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 43.4633 | 100.0000 | 379 | 493 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.0711 | 51.5528 | 77.9817 | 37.7143 | 83 | 78 | 85 | 24 | 22 | 91.6667 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 78.1790 | 97.7444 | 65.1399 | 76.7730 | 260 | 6 | 256 | 137 | 5 | 3.6496 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 81.7352 | 100.0000 | 69.1120 | 78.6831 | 155 | 0 | 179 | 80 | 5 | 6.2500 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 83.7838 | 100.0000 | 31 | 6 | 0 | 0 | 0 | ||||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 72.9858 | 100.0000 | 57.4627 | 71.8487 | 74 | 0 | 77 | 57 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 63.9167 | 73.6842 | 56.4356 | 98.6567 | 42 | 15 | 57 | 44 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 68.3576 | 78.5714 | 60.4938 | 98.6745 | 33 | 9 | 49 | 32 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 44.4444 | 0.0000 | 0.0000 | 4 | 5 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 54.0541 | 83.3333 | 40.0000 | 98.5795 | 5 | 1 | 8 | 12 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 94.4318 | 96.0944 | 92.8258 | 50.7186 | 3543 | 144 | 3597 | 278 | 63 | 22.6619 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 95.0350 | 97.4018 | 92.7804 | 51.2443 | 1612 | 43 | 2763 | 215 | 42 | 19.5349 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 92.9780 | 0.0000 | 0.0000 | 1099 | 83 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 95.3664 | 97.8824 | 92.9766 | 48.8889 | 832 | 18 | 834 | 63 | 21 | 33.3333 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 83.2079 | 85.6274 | 80.9215 | 46.7151 | 1126 | 189 | 1247 | 294 | 107 | 36.3946 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.1656 | 90.9091 | 80.1047 | 46.7967 | 300 | 30 | 1071 | 266 | 88 | 33.0827 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 82.0933 | 0.0000 | 0.0000 | 651 | 142 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 88.6433 | 91.1458 | 86.2745 | 46.1741 | 175 | 17 | 176 | 28 | 19 | 67.8571 | |
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| qzeng-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 95.6648 | 97.6879 | 93.7238 | 36.7934 | 1690 | 40 | 1792 | 120 | 21 | 17.5000 | |