PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
7651-7700 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.9129 | 99.8992 | 99.9266 | 60.1913 | 10900 | 11 | 10896 | 8 | 5 | 62.5000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.9002 | 99.8860 | 99.9144 | 60.6431 | 7011 | 8 | 7007 | 6 | 3 | 50.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.7500 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9357 | 99.9228 | 99.9485 | 59.3344 | 3884 | 3 | 3884 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.6738 | 99.8792 | 97.4971 | 38.9618 | 7443 | 9 | 7440 | 191 | 3 | 1.5707 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9485 | 99.8507 | 96.1175 | 40.3651 | 4682 | 7 | 4679 | 189 | 1 | 0.5291 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.2312 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.3939 | 41 | 1 | 41 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2222 | 97.2222 | 97.2222 | 88.3117 | 35 | 1 | 35 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.1818 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6672 | 99.8841 | 99.4512 | 37.3053 | 3446 | 4 | 3443 | 19 | 2 | 10.5263 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5336 | 99.9532 | 99.1175 | 38.8352 | 2137 | 1 | 2134 | 19 | 2 | 10.5263 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 100.0000 | 0 | 1 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9237 | 99.8474 | 100.0000 | 34.5500 | 1309 | 2 | 1309 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5507 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2143 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | * | 98.9757 | 99.3865 | 98.5682 | 71.0162 | 11016 | 68 | 11015 | 160 | 25 | 15.6250 | |
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | het | 98.6394 | 99.3908 | 97.8993 | 74.3366 | 7178 | 44 | 7177 | 154 | 21 | 13.6364 | |
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.7742 | 93.7500 | 100.0000 | 68.7500 | 15 | 1 | 15 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m0_e0 | homalt | 99.6221 | 99.4020 | 99.8433 | 61.4866 | 3823 | 23 | 3823 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | * | 99.3526 | 99.5959 | 99.1104 | 66.8404 | 24402 | 99 | 24398 | 219 | 31 | 14.1553 | |
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | het | 99.1089 | 99.5719 | 98.6501 | 70.0769 | 15351 | 66 | 15347 | 210 | 25 | 11.9048 | |
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | hetalt | 97.5000 | 95.1220 | 100.0000 | 70.4545 | 39 | 2 | 39 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m1_e0 | homalt | 99.7786 | 99.6572 | 99.9002 | 59.2105 | 9012 | 31 | 9012 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | * | 99.3603 | 99.6045 | 99.1174 | 68.4796 | 24934 | 99 | 24930 | 222 | 31 | 13.9640 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | het | 99.1197 | 99.5817 | 98.6621 | 71.4019 | 15711 | 66 | 15707 | 213 | 25 | 11.7371 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | hetalt | 97.5610 | 95.2381 | 100.0000 | 72.7891 | 40 | 2 | 40 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m2_e0 | homalt | 99.7827 | 99.6636 | 99.9021 | 61.6697 | 9183 | 31 | 9183 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e1 | * | 99.3647 | 99.6084 | 99.1222 | 68.5080 | 25184 | 99 | 25180 | 223 | 31 | 13.9013 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e1 | het | 99.1255 | 99.5859 | 98.6693 | 71.4407 | 15872 | 66 | 15868 | 214 | 25 | 11.6822 | |
| bgallagher-sentieon | SNP | tv | map_l100_m2_e1 | hetalt | 97.6190 | 95.3488 | 100.0000 | 72.2973 | 41 | 2 | 41 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l100_m2_e1 | homalt | 99.7847 | 99.6667 | 99.9030 | 61.6624 | 9271 | 31 | 9271 | 9 | 6 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | * | 98.6421 | 99.1555 | 98.1340 | 76.7581 | 6575 | 56 | 6574 | 125 | 19 | 15.2000 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | het | 98.2208 | 99.1138 | 97.3437 | 79.3814 | 4362 | 39 | 4361 | 119 | 15 | 12.6050 | |
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | hetalt | 94.1176 | 88.8889 | 100.0000 | 77.1429 | 8 | 1 | 8 | 0 | 0 | ||
| bgallagher-sentieon | SNP | tv | map_l125_m0_e0 | homalt | 99.5036 | 99.2796 | 99.7286 | 68.6827 | 2205 | 16 | 2205 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | * | 99.1503 | 99.4630 | 98.8396 | 71.8727 | 15930 | 86 | 15928 | 187 | 28 | 14.9733 | |
| bgallagher-sentieon | SNP | tv | map_l125_m1_e0 | het | 98.8364 | 99.4173 | 98.2622 | 74.9493 | 10067 | 59 | 10065 | 178 | 22 | 12.3596 | |