PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Entry TypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
5451-5500 / 86044 show all
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
95.2381
100.0000
90.9091
95.2790
901010
0.0000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.8718
70800
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
100.0000
00000
asubramanian-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200homalt
80.0000
100.0000
66.6667
96.0526
20210
0.0000
asubramanian-gatkSNP*map_l100_m0_e0*
45.8193
29.7342
99.8160
91.0946
9765230769765186
33.3333
asubramanian-gatkSNP*map_l100_m0_e0het
48.7115
32.2235
99.7518
92.2778
6833143726833176
35.2941
asubramanian-gatkSNP*map_l100_m0_e0hetalt
31.5789
18.7500
100.0000
95.2381
313300
asubramanian-gatkSNP*map_l100_m0_e0homalt
40.2612
25.2065
99.9659
86.1052
29298691292910
0.0000
asubramanian-gatkSNP*map_l100_m1_e0*
60.2018
43.0908
99.8527
84.6729
3119941204311934612
26.0870
asubramanian-gatkSNP*map_l100_m1_e0het
63.0315
46.0636
99.7898
86.5707
2089424465208884412
27.2727
asubramanian-gatkSNP*map_l100_m1_e0hetalt
48.1481
31.7073
100.0000
90.9091
13281300
asubramanian-gatkSNP*map_l100_m1_e0homalt
55.1894
38.1143
99.9806
78.4662
10292167111029220
0.0000
asubramanian-gatkSNP*map_l100_m2_e0*
60.9821
43.8984
99.8339
85.3165
3246941495324635414
25.9259
asubramanian-gatkSNP*map_l100_m2_e0het
63.7840
46.8782
99.7614
87.0574
2175124648217455214
26.9231
asubramanian-gatkSNP*map_l100_m2_e0hetalt
50.0000
33.3333
100.0000
91.3043
14281400
asubramanian-gatkSNP*map_l100_m2_e0homalt
55.9994
38.8911
99.9813
79.7534
10704168191070420
0.0000
asubramanian-gatkSNP*map_l100_m2_e1*
61.2013
44.1254
99.8365
85.2564
3297841759329725414
25.9259
asubramanian-gatkSNP*map_l100_m2_e1het
64.0057
47.1171
99.7652
87.0062
2209724801220915214
26.9231
asubramanian-gatkSNP*map_l100_m2_e1hetalt
51.7241
34.8837
100.0000
90.7407
15281500
asubramanian-gatkSNP*map_l100_m2_e1homalt
56.2073
39.0920
99.9816
79.6586
10866169301086620
0.0000
asubramanian-gatkSNP*map_l125_m0_e0*
35.5829
21.6508
99.8098
95.1193
419715188419785
62.5000
asubramanian-gatkSNP*map_l125_m0_e0het
38.5630
23.9024
99.7364
95.6908
30279637302785
62.5000
asubramanian-gatkSNP*map_l125_m0_e0hetalt
20.0000
11.1111
100.0000
98.1818
18100
asubramanian-gatkSNP*map_l125_m0_e0homalt
29.6663
17.4166
100.0000
92.5404
11695543116900
asubramanian-gatkSNP*map_l125_m1_e0*
46.3852
30.2138
99.8032
91.3119
136953163213692276
22.2222
asubramanian-gatkSNP*map_l125_m1_e0het
49.6482
33.0516
99.7236
92.3828
9384190089381266
23.0769
asubramanian-gatkSNP*map_l125_m1_e0hetalt
37.8378
23.3333
100.0000
93.2692
723700
asubramanian-gatkSNP*map_l125_m1_e0homalt
40.5846
25.4599
99.9768
87.4504
430412601430410
0.0000
asubramanian-gatkSNP*map_l125_m2_e0*
47.7392
31.3764
99.7686
91.5938
146603206314657348
23.5294
asubramanian-gatkSNP*map_l125_m2_e0het
50.9572
34.2281
99.6721
92.5837
100351928310032338
24.2424
asubramanian-gatkSNP*map_l125_m2_e0hetalt
37.8378
23.3333
100.0000
94.6970
723700
asubramanian-gatkSNP*map_l125_m2_e0homalt
41.9933
26.5784
99.9784
88.1315
461812757461810
0.0000
asubramanian-gatkSNP*map_l125_m2_e1*
47.9740
31.5792
99.7724
91.5607
149063229614903348
23.5294
asubramanian-gatkSNP*map_l125_m2_e1het
51.2109
34.4568
99.6778
92.5521
102131942710210338
24.2424
asubramanian-gatkSNP*map_l125_m2_e1hetalt
37.8378
23.3333
100.0000
94.6970
723700
asubramanian-gatkSNP*map_l125_m2_e1homalt
42.1801
26.7283
99.9787
88.0838
468612846468610
0.0000
asubramanian-gatkSNP*map_l150_m0_e0*
31.2706
18.5422
99.7318
96.8590
22319801223163
50.0000
asubramanian-gatkSNP*map_l150_m0_e0het
34.0434
20.5290
99.6333
97.2059
16306310163063
50.0000
asubramanian-gatkSNP*map_l150_m0_e0hetalt
50.0000
33.3333
100.0000
98.0000
12100
asubramanian-gatkSNP*map_l150_m0_e0homalt
25.5918
14.6735
100.0000
95.2449
600348960000
asubramanian-gatkSNP*map_l150_m1_e0*
38.6014
23.9309
99.7548
94.4087
7325232847322185
27.7778
asubramanian-gatkSNP*map_l150_m1_e0het
41.8810
26.5117
99.6495
95.0572
5121141955118185
27.7778
asubramanian-gatkSNP*map_l150_m1_e0hetalt
40.0000
25.0000
100.0000
94.6237
515500
asubramanian-gatkSNP*map_l150_m1_e0homalt
32.6455
19.5068
100.0000
91.9371
21999074219900
asubramanian-gatkSNP*map_l150_m2_e0*
40.2806
25.2386
99.7022
94.5086
8039238138036246
25.0000
asubramanian-gatkSNP*map_l150_m2_e0het
43.4711
27.8051
99.5729
95.1282
5598145355595246
25.0000
asubramanian-gatkSNP*map_l150_m2_e0hetalt
40.0000
25.0000
100.0000
95.6140
515500
asubramanian-gatkSNP*map_l150_m2_e0homalt
34.4676
20.8223
100.0000
92.2232
24369263243600
asubramanian-gatkSNP*map_l150_m2_e1*
40.4494
25.3710
99.7071
94.4964
8172240388169246
25.0000
asubramanian-gatkSNP*map_l150_m2_e1het
43.6280
27.9330
99.5796
95.1225
5688146755685246
25.0000