PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1701-1750 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | * | map_siren | homalt | 84.4526 | 80.6077 | 88.6825 | 45.6664 | 44460 | 10696 | 44453 | 5673 | 5485 | 96.6861 | |
| cchapple-custom | SNP | * | map_l100_m1_e0 | het | 96.8285 | 97.8593 | 95.8192 | 72.2809 | 44388 | 971 | 44440 | 1939 | 401 | 20.6808 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6076 | 97.1467 | 98.0729 | 73.4952 | 44398 | 1304 | 44428 | 873 | 38 | 4.3528 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6076 | 97.1467 | 98.0729 | 73.4952 | 44398 | 1304 | 44428 | 873 | 38 | 4.3528 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 96.4383 | 96.3424 | 96.5343 | 67.6863 | 41750 | 1585 | 44400 | 1594 | 1079 | 67.6913 | |
| gduggal-bwaplat | INDEL | D1_5 | * | homalt | 94.9240 | 90.7227 | 99.5332 | 62.2451 | 44387 | 4539 | 44353 | 208 | 178 | 85.5769 | |
| gduggal-snapvard | SNP | * | map_l100_m2_e0 | het | 93.3360 | 96.7693 | 90.1379 | 78.6381 | 44900 | 1499 | 44319 | 4849 | 371 | 7.6511 | |
| gduggal-snapvard | SNP | tv | map_siren | * | 95.8840 | 96.8735 | 94.9146 | 68.0322 | 44494 | 1436 | 44271 | 2372 | 211 | 8.8955 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 91.7140 | 88.5981 | 95.0570 | 53.8425 | 38394 | 4941 | 44230 | 2300 | 2147 | 93.3478 | |
| gduggal-snapplat | SNP | * | map_l100_m2_e0 | het | 95.2448 | 95.0839 | 95.4062 | 81.1675 | 44118 | 2281 | 44154 | 2126 | 1062 | 49.9530 | |
| gduggal-snapvard | INDEL | D1_5 | * | homalt | 90.7791 | 84.7811 | 97.6903 | 44.1687 | 41480 | 7446 | 44115 | 1043 | 1010 | 96.8360 | |
| jpowers-varprowl | SNP | * | map_l100_m1_e0 | het | 97.3402 | 97.0590 | 97.6230 | 72.4758 | 44025 | 1334 | 44027 | 1072 | 263 | 24.5336 | |
| jpowers-varprowl | SNP | * | map_l125_m1_e0 | * | 97.5600 | 97.1209 | 98.0031 | 75.2469 | 44022 | 1305 | 44022 | 897 | 282 | 31.4381 | |
| cchapple-custom | SNP | * | map_l125_m1_e0 | * | 96.8884 | 97.0680 | 96.7095 | 73.1758 | 43998 | 1329 | 43998 | 1497 | 343 | 22.9125 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 79.0227 | 95.1074 | 67.5916 | 78.7307 | 43466 | 2236 | 43994 | 21094 | 684 | 3.2426 | |
| gduggal-snapfb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 79.0227 | 95.1074 | 67.5916 | 78.7307 | 43466 | 2236 | 43994 | 21094 | 684 | 3.2426 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 82.4169 | 95.5954 | 72.4316 | 76.0055 | 43689 | 2013 | 43987 | 16742 | 965 | 5.7640 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 82.4169 | 95.5954 | 72.4316 | 76.0055 | 43689 | 2013 | 43987 | 16742 | 965 | 5.7640 | |
| gduggal-snapfb | SNP | * | map_l125_m1_e0 | * | 96.8640 | 96.8959 | 96.8321 | 72.7854 | 43920 | 1407 | 43924 | 1437 | 620 | 43.1454 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | * | 98.7938 | 99.6867 | 97.9168 | 73.3897 | 45185 | 142 | 43853 | 933 | 38 | 4.0729 | |
| gduggal-bwavard | INDEL | D1_5 | * | homalt | 95.1427 | 90.8106 | 99.9088 | 44.5205 | 44430 | 4496 | 43826 | 40 | 27 | 67.5000 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | het | 97.9959 | 99.6627 | 96.3839 | 70.0308 | 45206 | 153 | 43739 | 1641 | 34 | 2.0719 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.3784 | 95.4685 | 95.2885 | 77.7755 | 43631 | 2071 | 43726 | 2162 | 267 | 12.3497 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.3784 | 95.4685 | 95.2885 | 77.7755 | 43631 | 2071 | 43726 | 2162 | 267 | 12.3497 | |
| gduggal-snapplat | SNP | tv | map_siren | * | 96.3584 | 95.1687 | 97.5782 | 71.5667 | 43711 | 2219 | 43717 | 1085 | 492 | 45.3456 | |
| gduggal-bwavard | SNP | * | map_l125_m1_e0 | * | 95.6870 | 97.6989 | 93.7563 | 78.5243 | 44284 | 1043 | 43712 | 2911 | 180 | 6.1834 | |
| ghariani-varprowl | INDEL | D1_5 | * | homalt | 93.4710 | 89.4248 | 97.9006 | 50.1151 | 43752 | 5174 | 43695 | 937 | 631 | 67.3426 | |
| jpowers-varprowl | INDEL | D1_5 | * | homalt | 93.6510 | 89.4228 | 98.2990 | 49.9719 | 43751 | 5175 | 43688 | 756 | 634 | 83.8624 | |
| gduggal-bwavard | SNP | * | map_l100_m1_e0 | het | 95.2191 | 97.5462 | 93.0004 | 78.0483 | 44246 | 1113 | 43686 | 3288 | 213 | 6.4781 | |
| jpowers-varprowl | INDEL | * | HG002complexvar | het | 92.4718 | 94.5577 | 90.4760 | 57.5873 | 43697 | 2515 | 43680 | 4598 | 4462 | 97.0422 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 58.0405 | 54.1246 | 62.5672 | 55.8642 | 35371 | 29980 | 43558 | 26060 | 19700 | 75.5948 | |
| anovak-vg | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 58.0405 | 54.1246 | 62.5672 | 55.8642 | 35371 | 29980 | 43558 | 26060 | 19700 | 75.5948 | |
| anovak-vg | SNP | ti | map_l100_m2_e1 | * | 84.6108 | 88.6390 | 80.9329 | 70.4744 | 43863 | 5622 | 43482 | 10244 | 2310 | 22.5498 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e1 | * | 94.0312 | 92.0554 | 96.0937 | 81.8790 | 43452 | 3750 | 43468 | 1767 | 944 | 53.4239 | |
| qzeng-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 91.9906 | 94.9155 | 89.2405 | 50.9643 | 16913 | 906 | 43453 | 5239 | 3113 | 59.4197 | |
| mlin-fermikit | SNP | * | map_l100_m1_e0 | * | 72.2095 | 59.9657 | 90.7360 | 51.7425 | 43417 | 28986 | 43409 | 4432 | 3924 | 88.5379 | |
| mlin-fermikit | INDEL | * | HG002complexvar | het | 95.8810 | 94.8801 | 96.9032 | 52.4432 | 43846 | 2366 | 43401 | 1387 | 1299 | 93.6554 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 94.0417 | 99.3129 | 89.3019 | 78.9695 | 45388 | 314 | 43340 | 5192 | 210 | 4.0447 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 94.0417 | 99.3129 | 89.3019 | 78.9695 | 45388 | 314 | 43340 | 5192 | 210 | 4.0447 | |
| gduggal-snapvard | SNP | * | map_l100_m1_e0 | het | 93.2304 | 96.7393 | 89.9672 | 77.3983 | 43880 | 1479 | 43312 | 4830 | 369 | 7.6398 | |
| gduggal-snapfb | INDEL | * | HG002complexvar | het | 90.2528 | 87.9122 | 92.7215 | 54.1807 | 40626 | 5586 | 43300 | 3399 | 1261 | 37.0991 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 95.2752 | 94.6742 | 95.8839 | 71.5291 | 43268 | 2434 | 43282 | 1858 | 1107 | 59.5802 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 95.2752 | 94.6742 | 95.8839 | 71.5291 | 43268 | 2434 | 43282 | 1858 | 1107 | 59.5802 | |
| gduggal-snapvard | SNP | * | map_l125_m1_e0 | * | 93.5846 | 96.5275 | 90.8158 | 77.9328 | 43753 | 1574 | 43182 | 4367 | 333 | 7.6254 | |
| cchapple-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.4986 | 96.2849 | 98.7434 | 52.0928 | 17157 | 662 | 43140 | 549 | 461 | 83.9709 | |
| gduggal-snapplat | SNP | * | map_l100_m1_e0 | het | 95.1709 | 95.0043 | 95.3380 | 79.9679 | 43093 | 2266 | 43129 | 2109 | 1058 | 50.1660 | |
| anovak-vg | SNP | ti | map_l100_m2_e0 | * | 84.5385 | 88.5991 | 80.8339 | 70.4808 | 43379 | 5582 | 43002 | 10196 | 2298 | 22.5383 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 90.4686 | 92.4642 | 88.5573 | 75.8297 | 42258 | 3444 | 42999 | 5556 | 1706 | 30.7055 | |
| anovak-vg | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 90.4686 | 92.4642 | 88.5573 | 75.8297 | 42258 | 3444 | 42999 | 5556 | 1706 | 30.7055 | |
| gduggal-snapplat | SNP | * | map_l125_m2_e0 | * | 93.9886 | 91.9975 | 96.0678 | 81.8481 | 42984 | 3739 | 42999 | 1760 | 941 | 53.4659 | |