PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1651-1700 / 86044 show all | |||||||||||||||
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.1609 | 99.8464 | 98.4848 | 39.5973 | 1950 | 3 | 1950 | 30 | 30 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 89.1082 | 85.6054 | 92.9098 | 41.8941 | 1011 | 170 | 1009 | 77 | 77 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 78.7267 | 84.4595 | 73.7226 | 75.5793 | 125 | 23 | 101 | 36 | 36 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9027 | 83.6009 | 99.6021 | 25.4941 | 729 | 143 | 751 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 88.2022 | 97.5155 | 80.5128 | 34.1216 | 157 | 4 | 157 | 38 | 38 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.2453 | 98.8722 | 99.6212 | 80.9111 | 263 | 3 | 263 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 95.8904 | 94.5946 | 97.2222 | 60.0000 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.6785 | 97.8849 | 99.4850 | 27.4595 | 1157 | 25 | 1159 | 6 | 6 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8234 | 99.7647 | 99.8822 | 49.2225 | 848 | 2 | 848 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4777 | 99.0751 | 99.8835 | 34.2649 | 1714 | 16 | 1715 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7748 | 100.0000 | 99.5506 | 33.1832 | 443 | 0 | 443 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 97.8571 | 96.4789 | 99.2754 | 41.7722 | 137 | 5 | 137 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 95.8333 | 95.8333 | 95.8333 | 72.4138 | 23 | 1 | 23 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | D6_15 | segdup | * | 96.8085 | 95.2880 | 98.3784 | 93.0582 | 182 | 9 | 182 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | D6_15 | segdup | homalt | 97.0874 | 100.0000 | 94.3396 | 91.8210 | 50 | 0 | 50 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | * | hetalt | 96.3839 | 93.3270 | 99.6479 | 53.7674 | 1958 | 140 | 1981 | 7 | 7 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.8474 | 92.5373 | 99.4030 | 66.7988 | 310 | 25 | 333 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002compoundhet | hetalt | 96.5418 | 93.3588 | 99.9494 | 44.0544 | 1954 | 139 | 1975 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | HG002compoundhet | homalt | 14.6341 | 100.0000 | 7.8947 | 76.3975 | 3 | 0 | 3 | 35 | 35 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.1030 | 94.6827 | 99.6503 | 63.0013 | 552 | 31 | 570 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.5621 | 93.6267 | 99.6875 | 66.3512 | 617 | 42 | 638 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.3082 | 81.6092 | 98.6111 | 83.0588 | 71 | 16 | 71 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 96.0000 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 95.9169 | 92.6686 | 99.4012 | 55.4667 | 316 | 25 | 332 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 93.6170 | 95.6522 | 91.6667 | 89.1892 | 22 | 1 | 22 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7901 | 94.4056 | 99.2982 | 51.6949 | 270 | 16 | 283 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 95.4545 | 95.4545 | 95.4545 | 87.6404 | 21 | 1 | 21 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 95.7836 | 92.3684 | 99.4609 | 59.6300 | 351 | 29 | 369 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.5621 | 93.6267 | 99.6875 | 66.3512 | 617 | 42 | 638 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 96.5190 | 93.9068 | 99.2806 | 63.1788 | 262 | 17 | 276 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 96.4706 | 100.0000 | 93.1818 | 85.4305 | 41 | 0 | 41 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 94.5517 | 91.4894 | 97.8261 | 77.4510 | 43 | 4 | 45 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 90.5660 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | * | hetalt | 96.7648 | 93.7740 | 99.9527 | 62.3212 | 10498 | 697 | 10559 | 5 | 5 | 100.0000 | |
| jli-custom | INDEL | I1_5 | HG002complexvar | hetalt | 92.7842 | 86.7323 | 99.7439 | 70.2420 | 1497 | 229 | 1558 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | I1_5 | HG002compoundhet | hetalt | 96.7731 | 93.7729 | 99.9716 | 58.2211 | 10481 | 696 | 10542 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.4149 | 87.7369 | 99.8786 | 37.6230 | 787 | 110 | 823 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.0633 | 94.3415 | 99.9468 | 62.9123 | 5602 | 336 | 5641 | 3 | 3 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.5913 | 99.8586 | 99.3255 | 71.8824 | 3532 | 5 | 3534 | 24 | 24 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.1401 | 94.4708 | 99.9645 | 35.6743 | 5570 | 326 | 5631 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7593 | 99.5000 | 98.0296 | 60.1179 | 199 | 1 | 199 | 4 | 4 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8955 | 100.0000 | 99.7912 | 75.1685 | 478 | 0 | 478 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8557 | 100.0000 | 99.7118 | 78.4739 | 346 | 0 | 346 | 1 | 1 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.4901 | 95.1220 | 90.0000 | 74.9304 | 78 | 4 | 81 | 9 | 9 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 97.3167 | 94.8139 | 99.9552 | 24.2743 | 4406 | 241 | 4459 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 97.7249 | 98.9214 | 96.5569 | 66.6334 | 642 | 7 | 645 | 23 | 23 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.8720 | 95.8799 | 99.9486 | 22.7273 | 3863 | 166 | 3891 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.5256 | 99.4746 | 97.5945 | 65.3571 | 568 | 3 | 568 | 14 | 14 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 97.2341 | 94.6563 | 99.9563 | 27.5665 | 4517 | 255 | 4570 | 2 | 2 | 100.0000 | |
| jli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 98.4868 | 99.3209 | 97.6667 | 72.1900 | 1170 | 8 | 1172 | 28 | 28 | 100.0000 | |