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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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1801-1850 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.5884 | 99.5263 | 99.6506 | 48.9164 | 3992 | 19 | 3993 | 14 | 1 | 7.1429 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8361 | 99.8770 | 99.7952 | 51.6436 | 2436 | 3 | 2437 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 96.0972 | 94.5701 | 97.6744 | 91.2209 | 209 | 12 | 210 | 5 | 1 | 20.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 97.7738 | 97.6852 | 97.8626 | 87.3723 | 1266 | 30 | 1282 | 28 | 7 | 25.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.9777 | 98.0072 | 97.9483 | 86.5329 | 1082 | 22 | 1098 | 23 | 6 | 26.0870 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 99.0897 | 98.8283 | 99.3524 | 77.3626 | 6579 | 78 | 6597 | 43 | 9 | 20.9302 | |
| asubramanian-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.1776 | 97.0330 | 99.3494 | 70.2755 | 30219 | 924 | 30236 | 198 | 22 | 11.1111 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.2022 | 98.8423 | 99.5649 | 69.6516 | 4781 | 56 | 4805 | 21 | 9 | 42.8571 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.7143 | 93.7500 | 78.9474 | 97.3501 | 15 | 1 | 15 | 4 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.3498 | 98.7237 | 99.9839 | 45.5999 | 6188 | 80 | 6193 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0572 | 98.8725 | 99.2426 | 41.5382 | 10611 | 121 | 10614 | 81 | 2 | 2.4691 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 92.9792 | 91.0891 | 94.9495 | 93.3557 | 92 | 9 | 94 | 5 | 3 | 60.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2920 | 98.7455 | 99.8446 | 31.3666 | 3857 | 49 | 3856 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 8 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | map_l100_m0_e0 | * | 46.8392 | 30.5957 | 99.8501 | 90.3797 | 6661 | 15110 | 6661 | 10 | 5 | 50.0000 | |
| asubramanian-gatk | SNP | ti | map_l100_m1_e0 | * | 61.7256 | 44.6642 | 99.8787 | 83.4799 | 21408 | 26523 | 21404 | 26 | 10 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e0 | * | 62.4314 | 45.4117 | 99.8563 | 84.1830 | 22234 | 26727 | 22230 | 32 | 12 | 37.5000 | |
| asubramanian-gatk | SNP | ti | map_l100_m2_e1 | * | 62.6607 | 45.6542 | 99.8585 | 84.1129 | 22592 | 26893 | 22588 | 32 | 12 | 37.5000 | |
| asubramanian-gatk | SNP | ti | map_l125_m0_e0 | * | 36.2073 | 22.1125 | 99.8585 | 94.7728 | 2822 | 9940 | 2822 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l125_m1_e0 | * | 47.1088 | 30.8267 | 99.8454 | 90.8763 | 9043 | 20292 | 9041 | 14 | 5 | 35.7143 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e0 | * | 48.4647 | 32.0015 | 99.8144 | 91.1697 | 9683 | 20575 | 9681 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l125_m2_e1 | * | 48.6953 | 32.2026 | 99.8174 | 91.1355 | 9844 | 20725 | 9842 | 18 | 6 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l150_m0_e0 | * | 32.0231 | 19.0688 | 99.8668 | 96.6434 | 1499 | 6362 | 1499 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m1_e0 | * | 39.2304 | 24.4115 | 99.8340 | 94.1489 | 4812 | 14900 | 4810 | 8 | 4 | 50.0000 | |
| asubramanian-gatk | SNP | ti | map_l150_m2_e0 | * | 40.8545 | 25.6874 | 99.7538 | 94.2642 | 5269 | 15243 | 5267 | 13 | 5 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l150_m2_e1 | * | 40.9816 | 25.7878 | 99.7572 | 94.2645 | 5344 | 15379 | 5342 | 13 | 5 | 38.4615 | |
| asubramanian-gatk | SNP | ti | map_l250_m0_e0 | * | 32.2936 | 19.2701 | 99.6226 | 98.9715 | 264 | 1106 | 264 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m1_e0 | * | 32.0381 | 19.0871 | 99.6579 | 98.2478 | 874 | 3705 | 874 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e0 | * | 33.5713 | 20.1877 | 99.6059 | 98.2299 | 1011 | 3997 | 1011 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | ti | map_l250_m2_e1 | * | 33.6335 | 20.2325 | 99.6120 | 98.2384 | 1027 | 4049 | 1027 | 4 | 1 | 25.0000 | |
| asubramanian-gatk | SNP | ti | map_siren | * | 78.3158 | 64.4054 | 99.8903 | 68.2204 | 64634 | 35721 | 64622 | 71 | 23 | 32.3944 | |
| asubramanian-gatk | SNP | ti | segdup | * | 98.1992 | 96.8521 | 99.5842 | 91.3917 | 18922 | 615 | 18920 | 79 | 8 | 10.1266 | |
| asubramanian-gatk | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | ti | tech_badpromoters | * | 98.8235 | 98.8235 | 98.8235 | 45.1613 | 84 | 1 | 84 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | * | * | 98.7904 | 97.7276 | 99.8765 | 24.3508 | 947655 | 22035 | 947577 | 1172 | 61 | 5.2048 | |
| asubramanian-gatk | SNP | tv | HG002complexvar | * | 98.0754 | 96.2442 | 99.9776 | 22.6117 | 236907 | 9245 | 236824 | 53 | 18 | 33.9623 | |
| asubramanian-gatk | SNP | tv | HG002compoundhet | * | 98.0032 | 96.5370 | 99.5145 | 49.4980 | 8614 | 309 | 8609 | 42 | 11 | 26.1905 | |
| asubramanian-gatk | SNP | tv | decoy | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | tv | func_cds | * | 99.5422 | 99.4967 | 99.5877 | 36.6971 | 4349 | 22 | 4348 | 18 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.8074 | 98.3509 | 99.2681 | 69.2197 | 1491 | 25 | 1492 | 11 | 2 | 18.1818 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.0957 | 98.9522 | 99.2395 | 65.0592 | 27388 | 290 | 27403 | 210 | 22 | 10.4762 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.2216 | 97.3921 | 99.0654 | 77.9808 | 14191 | 380 | 14204 | 134 | 16 | 11.9403 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.3985 | 98.9521 | 99.8489 | 49.8485 | 1322 | 14 | 1322 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.6549 | 99.6320 | 99.6779 | 64.1892 | 2166 | 8 | 2166 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6530 | 99.7222 | 99.5839 | 69.2078 | 1436 | 4 | 1436 | 6 | 0 | 0.0000 | |