PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
49601-49650 / 86044 show all | |||||||||||||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 19.9827 | 12.2677 | 53.8462 | 92.1805 | 33 | 236 | 28 | 24 | 13 | 54.1667 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 66.3233 | 60.7843 | 72.9730 | 93.0057 | 31 | 20 | 27 | 10 | 2 | 20.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.4608 | 0.0000 | 0.0000 | 1 | 216 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 12.5000 | 100.0000 | 6.6667 | 88.9706 | 1 | 0 | 1 | 14 | 11 | 78.5714 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_gt200 | homalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 75.4470 | 65.9048 | 88.2202 | 66.0139 | 692 | 358 | 689 | 92 | 70 | 76.0870 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 91.1970 | 96.8085 | 86.2004 | 69.9943 | 455 | 15 | 456 | 73 | 58 | 79.4521 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 0.0000 | 1.2780 | 0.0000 | 0.0000 | 4 | 309 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 89.7881 | 87.2659 | 92.4603 | 52.8972 | 233 | 34 | 233 | 19 | 12 | 63.1579 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 6.8966 | 4.0000 | 25.0000 | 88.8889 | 1 | 24 | 1 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 50.0000 | 50.0000 | 93.7500 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 23 | 0 | 0 | 0 | |||
| ghariani-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| ghariani-varprowl | SNP | tv | tech_badpromoters | * | 96.5986 | 98.6111 | 94.6667 | 59.4595 | 71 | 1 | 71 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | het | 95.6522 | 100.0000 | 91.6667 | 63.2653 | 33 | 0 | 33 | 3 | 1 | 33.3333 | |
| ghariani-varprowl | SNP | tv | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 55.1724 | 38 | 1 | 38 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 4 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l250_m1_e0 | homalt | 98.1979 | 96.6397 | 99.8072 | 87.4354 | 1553 | 54 | 1553 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | * | 96.2305 | 97.3642 | 95.1229 | 91.2925 | 4876 | 132 | 4876 | 250 | 52 | 20.8000 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | het | 95.2267 | 97.7873 | 92.7967 | 92.2619 | 3182 | 72 | 3182 | 247 | 49 | 19.8381 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l250_m2_e0 | homalt | 98.3169 | 96.8553 | 99.8232 | 88.3416 | 1694 | 55 | 1694 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | * | 96.1939 | 97.3404 | 95.0741 | 91.3522 | 4941 | 135 | 4941 | 256 | 54 | 21.0938 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | het | 95.1903 | 97.7872 | 92.7278 | 92.3245 | 3226 | 73 | 3226 | 253 | 51 | 20.1581 | |
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 5 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_l250_m2_e1 | homalt | 98.2808 | 96.7833 | 99.8254 | 88.3683 | 1715 | 57 | 1715 | 3 | 3 | 100.0000 | |
| ghariani-varprowl | SNP | ti | map_siren | * | 99.0024 | 99.3374 | 98.6698 | 59.6146 | 99690 | 665 | 99693 | 1344 | 247 | 18.3780 | |
| ghariani-varprowl | SNP | ti | map_siren | het | 98.6913 | 99.3636 | 98.0280 | 62.9270 | 61985 | 397 | 61987 | 1247 | 191 | 15.3168 | |
| ghariani-varprowl | SNP | ti | map_siren | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 57 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | map_siren | homalt | 99.5932 | 99.4435 | 99.7434 | 52.5183 | 37705 | 211 | 37706 | 97 | 56 | 57.7320 | |
| ghariani-varprowl | SNP | ti | segdup | * | 98.2251 | 99.6929 | 96.7998 | 91.5895 | 19477 | 60 | 19480 | 644 | 38 | 5.9006 | |
| ghariani-varprowl | SNP | ti | segdup | het | 97.4023 | 99.5594 | 95.3366 | 92.6943 | 11977 | 53 | 11980 | 586 | 2 | 0.3413 | |
| ghariani-varprowl | SNP | ti | segdup | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 2 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | segdup | homalt | 99.5818 | 99.9334 | 99.2326 | 88.7647 | 7500 | 5 | 7500 | 58 | 36 | 62.0690 | |
| ghariani-varprowl | SNP | ti | segdupwithalt | * | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | segdupwithalt | het | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | segdupwithalt | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | segdupwithalt | homalt | 0.0000 | 100.0000 | 0 | 0 | 0 | 0 | 0 | ||||
| ghariani-varprowl | SNP | ti | tech_badpromoters | * | 96.5517 | 98.8235 | 94.3820 | 48.8506 | 84 | 1 | 84 | 5 | 1 | 20.0000 | |
| ghariani-varprowl | SNP | ti | tech_badpromoters | het | 94.5055 | 97.7273 | 91.4894 | 52.0408 | 43 | 1 | 43 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | SNP | ti | tech_badpromoters | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 44.7368 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | SNP | tv | * | * | 98.9190 | 99.7874 | 98.0655 | 30.2667 | 967620 | 2062 | 967900 | 19093 | 1348 | 7.0602 | |
| ghariani-varprowl | SNP | tv | * | het | 98.5275 | 99.8276 | 97.2608 | 33.9264 | 590670 | 1020 | 590877 | 16641 | 154 | 0.9254 | |
| ghariani-varprowl | SNP | tv | * | hetalt | 0.0000 | 0.0000 | 0.0000 | 0 | 871 | 0 | 0 | 0 | |||
| ghariani-varprowl | SNP | tv | * | homalt | 99.6533 | 99.9547 | 99.3538 | 23.4817 | 376950 | 171 | 377023 | 2452 | 1194 | 48.6949 | |